RNA id: TU1736688


Basic Information

Item Value
RNA id TU1736688
length 957
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G1517176
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11996301 ~ 11997659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAGAAAGTTGCCAGTTCTAAAGAGaaatgtgaaagagagagaaaagggaagaaacaaacaaataaatcaaGAAGATAGAAAAATAAAGGATTTTAAAGAAACAAGCACCAACGTTTCCTTCCgtttcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaatgacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736672 lncRNA upstream 1358 11993702 ~ 11994943 (+) False G1517174
TU1736670 lncRNA upstream 1358 11994514 ~ 11994943 (+) True G1517174
TU1736640 lncRNA upstream 54404 11940062 ~ 11941897 (+) False G1517150
TU1736595 lncRNA downstream 69725 12067384 ~ 12068234 (+) True G1517110
TU1736730 lncRNA downstream 88231 12085890 ~ 12086420 (+) True G1517202
TU1736732 lncRNA downstream 91011 12088670 ~ 12088910 (+) True G1517204
TU1736734 lncRNA downstream 91728 12089387 ~ 12089608 (+) True G1517206
TU1736608 lncRNA downstream 107898 12105557 ~ 12161243 (+) True LOC110527243
XM_036951855.1 mRNA upstream 70092 11885873 ~ 11926209 (+) False LOC110497058
XM_036951856.1 mRNA upstream 70092 11885873 ~ 11926209 (+) True LOC110497058
XM_036951851.1 mRNA upstream 182069 11809043 ~ 11814232 (+) True LOC118941095
trnas-cga-32 mRNA upstream 187311 11808909 ~ 11808990 (+) True trnas-cga-32
XM_036951852.1 mRNA upstream 187921 11803177 ~ 11808380 (+) True LOC110495630
XM_036951864.1 mRNA downstream 10295 12007954 ~ 12021342 (+) True LOC110527250
XM_021608408.2 mRNA downstream 41083 12038742 ~ 12045602 (+) True zswim2
XM_036951873.1 mRNA downstream 51320 12048979 ~ 12060014 (+) True dytn
XM_036951870.1 mRNA downstream 71390 12069049 ~ 12080939 (+) False LOC110538823
XM_036951872.1 mRNA downstream 71391 12069050 ~ 12080939 (+) False LOC110538823
TU1736637 other upstream 55196 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 352543 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 361322 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 903747 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 979212 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 835992 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 936995 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 939864 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1189442 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2437103 14434762 ~ 14436120 (+) True G1519096

Expression Profile