RNA id: TU1736877


Basic Information

Item Value
RNA id TU1736877
length 376
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1517312
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12419369 ~ 12419744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAGTAGAAAGAGGTGGGTCAGAAAAGCCGACATAACAAACCCGTAAAGTAAcatttaacatccatatatggccagctatgtacaTTGATAACTAACTTTAACATtcatttatcctgcaatagatgtgaTTCAAATGGTAATGTACCTTTttgtcttctaatgcctcttaaaggggaaagtcatctaaaagtaactgaatgtaatcagattatgttactgagtttgggtaatccaaagttactgattacaatgttggacaggtaactagtaactgtaacagattacatttagaaaataaCATACCTAACCctgaacacacatactgtatagccatgttgctctcacacacaccaatACCAACACCGGTCGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736876 lncRNA upstream 1147 12417916 ~ 12418222 (+) True G1517311
TU1736871 lncRNA upstream 3915 12415201 ~ 12415454 (+) True LOC110513922
TU1736869 lncRNA upstream 4296 12414542 ~ 12415073 (+) False LOC110513922
TU1736865 lncRNA upstream 26008 12391778 ~ 12393361 (+) True G1517302
TU1736846 lncRNA upstream 43081 12367547 ~ 12376288 (+) True G1517284
TU1736883 lncRNA downstream 19450 12439194 ~ 12439407 (+) True G1517318
TU1736890 lncRNA downstream 49280 12469024 ~ 12469491 (+) True G1517321
TU1736892 lncRNA downstream 87359 12507103 ~ 12507368 (+) True G1517323
TU1736895 lncRNA downstream 89867 12509611 ~ 12509868 (+) True G1517326
TU1736899 lncRNA downstream 105503 12525247 ~ 12525550 (+) True G1517330
XM_036951368.1 mRNA upstream 3891 12404859 ~ 12415478 (+) False LOC110513922
XM_036951369.1 mRNA upstream 10366 12404861 ~ 12409003 (+) False LOC110513922
XM_036951348.1 mRNA upstream 15336 12390243 ~ 12404033 (+) False LOC110527229
XM_036951347.1 mRNA upstream 15336 12395739 ~ 12404033 (+) True LOC110527229
XM_021570831.2 mRNA upstream 33745 12381426 ~ 12385624 (+) False LOC110495532
XM_036951367.1 mRNA downstream 28818 12448562 ~ 12454072 (+) True LOC118941034
XM_036951337.1 mRNA downstream 40265 12460009 ~ 12467899 (+) True LOC110527226
XM_036951365.1 mRNA downstream 122520 12542264 ~ 12545786 (+) True LOC110512988
XM_021608381.2 mRNA downstream 129911 12549655 ~ 12552772 (+) True LOC110527217
XM_036951306.1 mRNA downstream 132829 12552573 ~ 12569425 (+) True LOC110527211
TU1736637 other upstream 478264 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 775611 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 784390 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1326815 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1402280 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 413907 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 514910 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 517779 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 767357 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2015018 14434762 ~ 14436120 (+) True G1519096

Expression Profile