RNA id: TU1736890


Basic Information

Item Value
RNA id TU1736890
length 468
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1517321
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12469024 ~ 12469491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGACGGATCAACTTTGTTGATGGCTTGAAAAGGAAACCTTTACAGGAGTATTTTTctctccaaaacatgcatcctgtttgcaccAGTAATACTGCAGGAACTTttggtcctgaatacaaagtgctatatttggggcaaatccaacacattactgagtaccactccatattttcaagcatagtggtgcaTCATGGTCTGGTTATgtttgtaattgttaaggactggggagtttcagGATAACGATGGGAGCTAAAGCACAGGGAAAATCCTTAACCTGGTTgtatgctttccaccagacactgggagatgaattcacctttcagcaggactataacctaaaacacaagaccaagtctacactggagttgcttaccaagaagacagtgaatgttcccgaATGatcgagttacagttttgacaaatCTACTTGATCTATTTCAAGATGTAAATGGTtgtctggcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736883 lncRNA upstream 29617 12439194 ~ 12439407 (+) True G1517318
TU1736877 lncRNA upstream 49280 12419369 ~ 12419744 (+) True G1517312
TU1736876 lncRNA upstream 50802 12417916 ~ 12418222 (+) True G1517311
TU1736871 lncRNA upstream 53570 12415201 ~ 12415454 (+) True LOC110513922
TU1736869 lncRNA upstream 53951 12414542 ~ 12415073 (+) False LOC110513922
TU1736892 lncRNA downstream 37612 12507103 ~ 12507368 (+) True G1517323
TU1736895 lncRNA downstream 40120 12509611 ~ 12509868 (+) True G1517326
TU1736899 lncRNA downstream 55756 12525247 ~ 12525550 (+) True G1517330
TU1736924 lncRNA downstream 248591 12718082 ~ 12718713 (+) True G1517353
TU1736957 lncRNA downstream 249284 12718775 ~ 12718999 (+) True G1517386
XM_036951337.1 mRNA upstream 1125 12460009 ~ 12467899 (+) True LOC110527226
XM_036951367.1 mRNA upstream 14952 12448562 ~ 12454072 (+) True LOC118941034
XM_036951368.1 mRNA upstream 53546 12404859 ~ 12415478 (+) False LOC110513922
XM_036951369.1 mRNA upstream 60021 12404861 ~ 12409003 (+) False LOC110513922
XM_036951348.1 mRNA upstream 64991 12390243 ~ 12404033 (+) False LOC110527229
XM_036951365.1 mRNA downstream 72773 12542264 ~ 12545786 (+) True LOC110512988
XM_021608381.2 mRNA downstream 80164 12549655 ~ 12552772 (+) True LOC110527217
XM_036951306.1 mRNA downstream 83082 12552573 ~ 12569425 (+) True LOC110527211
XM_036951364.1 mRNA downstream 102420 12571911 ~ 12600335 (+) False LOC110527213
XM_036951363.1 mRNA downstream 102455 12571946 ~ 12600335 (+) False LOC110527213
TU1736637 other upstream 527919 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 825266 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 834045 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1376470 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1451935 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 364160 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 465163 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 468032 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 717610 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1965271 14434762 ~ 14436120 (+) True G1519096

Expression Profile