RNA id: TU1736899


Basic Information

Item Value
RNA id TU1736899
length 304
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1517330
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12525247 ~ 12525550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggctttgttatggaaggtttgggaatcgcttcttttaggtgtttgtagaatttaacggctcttttctggattttgataattagcgggtatcggcctaattctgctctgcatgcattatttggtgttctatgttgtacacggaggatatttctgcagaattctgcatgcagagtctcaatttggtgtttgtcccattttgtgaattcttggttggtgagcggacaccagacctcacaaccataaagggcattgggttctataactgattcaagtatttttagccagatcctaattagtatgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736895 lncRNA upstream 15379 12509611 ~ 12509868 (+) True G1517326
TU1736892 lncRNA upstream 17879 12507103 ~ 12507368 (+) True G1517323
TU1736890 lncRNA upstream 55756 12469024 ~ 12469491 (+) True G1517321
TU1736883 lncRNA upstream 85840 12439194 ~ 12439407 (+) True G1517318
TU1736877 lncRNA upstream 105503 12419369 ~ 12419744 (+) True G1517312
TU1736924 lncRNA downstream 192532 12718082 ~ 12718713 (+) True G1517353
TU1736957 lncRNA downstream 193225 12718775 ~ 12718999 (+) True G1517386
TU1736979 lncRNA downstream 238411 12763961 ~ 12765207 (+) True G1517408
TU1736980 lncRNA downstream 248662 12774212 ~ 12780369 (+) False G1517409
TU1736981 lncRNA downstream 248662 12774212 ~ 12785975 (+) False G1517409
XM_036951337.1 mRNA upstream 57348 12460009 ~ 12467899 (+) True LOC110527226
XM_036951367.1 mRNA upstream 71175 12448562 ~ 12454072 (+) True LOC118941034
XM_036951368.1 mRNA upstream 109769 12404859 ~ 12415478 (+) False LOC110513922
XM_036951369.1 mRNA upstream 116244 12404861 ~ 12409003 (+) False LOC110513922
XM_036951347.1 mRNA upstream 121214 12395739 ~ 12404033 (+) True LOC110527229
XM_036951365.1 mRNA downstream 16714 12542264 ~ 12545786 (+) True LOC110512988
XM_021608381.2 mRNA downstream 24105 12549655 ~ 12552772 (+) True LOC110527217
XM_036951306.1 mRNA downstream 27023 12552573 ~ 12569425 (+) True LOC110527211
XM_036951364.1 mRNA downstream 46361 12571911 ~ 12600335 (+) False LOC110527213
XM_036951363.1 mRNA downstream 46396 12571946 ~ 12600335 (+) False LOC110527213
TU1736637 other upstream 584142 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 881489 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 890268 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1432693 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1508158 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 308101 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 409104 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 411973 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 661551 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1909212 14434762 ~ 14436120 (+) True G1519096