RNA id: TU1736924


Basic Information

Item Value
RNA id TU1736924
length 632
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1517353
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12718082 ~ 12718713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaacaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcaattacagctgtaagtcgcttggggtatgtctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatgtgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatgttcctgtatttggctccatccatcttcccatcaattttaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736899 lncRNA upstream 192532 12525247 ~ 12525550 (+) True G1517330
TU1736895 lncRNA upstream 208214 12509611 ~ 12509868 (+) True G1517326
TU1736892 lncRNA upstream 210714 12507103 ~ 12507368 (+) True G1517323
TU1736890 lncRNA upstream 248591 12469024 ~ 12469491 (+) True G1517321
TU1736883 lncRNA upstream 278675 12439194 ~ 12439407 (+) True G1517318
TU1736957 lncRNA downstream 62 12718775 ~ 12718999 (+) True G1517386
TU1736979 lncRNA downstream 45248 12763961 ~ 12765207 (+) True G1517408
TU1736980 lncRNA downstream 55499 12774212 ~ 12780369 (+) False G1517409
TU1736981 lncRNA downstream 55499 12774212 ~ 12785975 (+) False G1517409
TU1736982 lncRNA downstream 64849 12783562 ~ 12785975 (+) True G1517409
XM_036951298.1 mRNA upstream 64326 12622325 ~ 12653756 (+) False LOC110497015
XM_036951299.1 mRNA upstream 64326 12622325 ~ 12653756 (+) True LOC110497015
XM_036951315.1 mRNA upstream 107702 12600823 ~ 12610380 (+) False LOC110497019
XM_036951316.1 mRNA upstream 107702 12601164 ~ 12610380 (+) True LOC110497019
XM_036951364.1 mRNA upstream 117747 12571911 ~ 12600335 (+) False LOC110527213
XM_036951353.1 mRNA downstream 31210 12749923 ~ 12829550 (+) False LOC110527205
XM_036951354.1 mRNA downstream 31249 12749962 ~ 12829550 (+) False LOC110527205
XM_036951355.1 mRNA downstream 31284 12749997 ~ 12829550 (+) False LOC110527205
XM_036951356.1 mRNA downstream 31336 12750049 ~ 12829550 (+) True LOC110527205
XM_036951326.1 mRNA downstream 155764 12874477 ~ 12879111 (+) False LOC110495518
TU1736637 other upstream 776977 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1074324 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1083103 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1625528 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1700993 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 114938 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 215941 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 218810 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 468388 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1716049 14434762 ~ 14436120 (+) True G1519096

Expression Profile