RNA id: TU1736980


Basic Information

Item Value
RNA id TU1736980
length 367
lncRNA type intronic
GC content 0.26
exon number 2
gene id G1517409
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12774212 ~ 12785975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagcatattaaactatatatctaacagcagacagcatattaaactatatatctaacagcatattaaactatatatctaacagcagacagcatattaaactatacatctaacagcagacagcatattaaactatatatctaacagtagacagcatattaaactatatatctaacagtagacagcatattaaactatatatctaacagcatattaaactatatatctaacagcagacagcatattaaactatatatctaacagcatattaaactatatatctaacagtagacagcatattaaactatatatctaacagcatattaaactatatatctaacagcatattaaactatatatctaacagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736979 lncRNA upstream 9005 12763961 ~ 12765207 (+) True G1517408
TU1736957 lncRNA upstream 55213 12718775 ~ 12718999 (+) True G1517386
TU1736924 lncRNA upstream 55499 12718082 ~ 12718713 (+) True G1517353
TU1736899 lncRNA upstream 248662 12525247 ~ 12525550 (+) True G1517330
TU1736895 lncRNA upstream 264344 12509611 ~ 12509868 (+) True G1517326
TU1736982 lncRNA downstream 3193 12783562 ~ 12785975 (+) True G1517409
TU1736983 lncRNA downstream 9176 12789545 ~ 12805543 (+) False G1517410
TU1736984 lncRNA downstream 14943 12795312 ~ 12805543 (+) True G1517410
TU1736991 lncRNA downstream 61014 12841383 ~ 12854300 (+) True G1517417
TU1736996 lncRNA downstream 76145 12856514 ~ 12877270 (+) True G1517422
XM_036951298.1 mRNA upstream 120456 12622325 ~ 12653756 (+) False LOC110497015
XM_036951299.1 mRNA upstream 120456 12622325 ~ 12653756 (+) True LOC110497015
XM_036951315.1 mRNA upstream 163832 12600823 ~ 12610380 (+) False LOC110497019
XM_036951316.1 mRNA upstream 163832 12601164 ~ 12610380 (+) True LOC110497019
XM_021608373.2 mRNA upstream 188061 12571956 ~ 12586151 (+) True LOC110527213
XM_036951326.1 mRNA downstream 94108 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA downstream 94114 12874483 ~ 12879111 (+) True LOC110495518
XM_021570809.2 mRNA downstream 102142 12882511 ~ 12885631 (+) True LOC110495515
NM_001165113.2 mRNA downstream 105726 12886095 ~ 12898735 (+) True cd3z
NM_001171859.1 mRNA downstream 294695 13075064 ~ 13080819 (+) True gp91phox
TU1736637 other upstream 833107 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1130454 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1139233 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1681658 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1757123 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 53282 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 154285 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 157154 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 406732 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1654393 14434762 ~ 14436120 (+) True G1519096

Expression Profile