RNA id: TU1736991


Basic Information

Item Value
RNA id TU1736991
length 3079
lncRNA type read_through
GC content 0.44
exon number 4
gene id G1517417
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12841383 ~ 12854300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGACCACCATCAGGTCCTTGGTGTCTCTATCCACGACACAGTGGGCAGCAGTGATGACCCAGTCAGGATGAACTATGACCCCACCACACAGACTAGTGCCTTTATGCTCCAATAGGACCTGCAACCACCAGTCCCATCACAAAGACAAATTGGCCACTCATCCATCACATCTCATTGTACATAAACCAAAATAATACTGTCTAATGTCATATAATGCCTAATGGAAGAGGTGGTAATAGATACTAACCTAGTTAATAGTACACCCTTTGACTTCAAGGATAGTGGTTGTATGGGAATGACTGTGGTTTAGTTATTCTACCAACTATGCCACATAATGCCCTGTGTGGCTTAGTTGGTAGATCATGGTGCTTGCAATTCCAGCATGGTGGGTTTAATTCCCATGGGAGACAAGCACAAAAAATGCACTCACTACTCTAAATCcctctggataagaatgtctgctaaattacGAAAATGTAGAAGGGTAGTATTGGCCAATCAAATGTGAAAGAGGTGGATGGATCCATTGTGCTCTCCAGCCAGGCGTTGATGTGTTACCTGCCATGGACAGGCTCCTTTGGGACAGTGGTTCCCACCGACTAGTTTGACTCGTGCCTGGCTCATCGGAGCTTCCAAGCCTGGGATTTTACCACACGGATACTGAACTGAtaatagacagacagacgagtTGTTGTTTCTAACTCTATTCATACATCAACAAATGCATGCTGGCTCCTTTTGGTTCTGTAAATATTACAGTCTGTTCGTAACAAACAGGGATTTCCCGTCTTTAACAAAACATCTGGGCTCATCTACTGTCCGTTACAGTTAGTACCTTGGGCAACACACTCTCTTCCGTCCTCTCCCAGGGCATAACCAGGAGCGCAGGAACACTTGCGTCTTGACCCAGAACTGTTACAGAAGTGCTCGCACTCCCCGTTAAGGGAGAGGCATTTCAGGGTGTCCTCAAACACTACAGTATGTTGGGAGAAAGGGGAAACGCAAGTAGGATGAGCAGAATGCGGTCAACATATCATATCACTAGCAAATGTTGGCAACACTTCACATTAGGGTGCTCTTACTACTGCGGAATTACAATAAACTATTGGTATGAAACTATTGTGAAAACCGGTGTTGCTTAATCCTGGTCCTGGAAACCCAAagggggtgcacattttggtttttgccctagcactacacatctGAGCACACATACTTTCTTaagacttatttttcttaaaactgcattgttggttaagggcttgtctgtaagcattttactgtaaggtctgttgtattcggagcatgtgacaaaaacattagatttgattcaactaatcaactcATTATCTAACATTtgattagtggaatcaggtgtgcagtgctagggcaaaaacagaaatgtgcacccctttgggaccccaggaccaggattaagaaacactggcGTAAACTATTGGTATAAAAATGGCAGCTAGGAATTCTCTTCCTACCTGTCTGACAGTATTTCCCTTCATAGCCTTCCAGACACTGACATGTGTAAGCCTCTCCCAGGGCATAACCAGGAGCGCAGGAACACTTGCGTCTTGACCCAGAACTGTTACAGAAGTGCTCGCACTCCCCGTTAAGGGAGAGGCATTTCAGGGTGTCCTCAAACACTACAGTCTGTCTGACAGTATTTCCCTTCATAGCCTTCCAGACACTGACATGTGTAAGAGTCATCCATGTAAACACAAGTTCCATTGTTTTTGCATGGGTTGACCAGGCAGGGATCCTGACCTTAGAGGGATCAATAGGGTAAAGGATATGACATTTGCTATTTGACATGCTGGACATTTCTTGTGCAAATAAATTAGGAATGTGATAACATGTATGTTATTACCATATTGGATTTTATACAACAATATAATTAGCATTTTATGAAAATGAATGAAAGCAATACTCTATCATATATTTTAGGCTGGTTGGAATTTTTTGTGTACAGTCCACATAGAAAAATCTGATTTACCCGTGTATGTCAACCAAAACCTTTTCTGTGGAAACAAACCATACATAGTCAGTTTTAAGAGTTCTCTGGAATTCTCACATGTTCCTATGCATTGCTAAATATTTCATTAAATTAAATCAAAATAGTGCTTCAATTAAAGTAATAGCAAATATTTCACCAAGTGAAATTACTACAAAATTGCACCGTTTGGGCGTCGTCCTCGAAAACTTCCCGAGCCTCTTCATAGTTACAAATTTCCTCGACACACTCGCGCTCGAGATTGCCCTGTTTCACCTCCTCGAAGTAGCCGCTGTTGGCGCGCCTTGCTCTGTCAAGCACCAGGTGCGCATCATCCTTCTTCAAGAAGACTTAAACATCGAATGACAAACCAGCGGCAGAAATGACAGTTGAAATGGCCCAAAGTGCACAAAATGTTTTCAGCAGCATCGTGGCGGACCTGAATCACCCAGAACTGGAACGATTTGAGGTAAACAATTCCAGCTCATATGACTCCCACTCACTCCAACagctcactcccactcactccaaCAGCTCACTCCCACTGCTCTGCAAACAGTTGCCACATCTGGGTGATGGTGACCAGACCTGAACCAGAGGATTAGGCCTATGTCTTACACTACATGGACAAAagaatgtggacacaccttcaaatgagtggattcggctatttcagtcacaccagttgctgacgtgtatacaatcgagcacacagccatgcaatctccatagacaaacaatgtCAGTAGAATGGACCGTACTGAGCTCAGTGAGCTCAGTCAGTTCCTCAAATGTCTGCTCTGTTAGAGCtgggcaactgtaagtgctgttattgtgaagtgtaaactTCTAGGAATAAGAATGTCTCAGCCggtaagtggtaggccacacaagctcacagaactggaccgccaAGTCCTTAGCGCTTAAACAAATTCTGTCCTcggctgcaacactcactaccgagttccaaactgcccctgggaGCAAAATCAGCGcaagaactgttagtcgggagcttcatgaaatgggtttccatggccgagcagatgcacaaaagcctaagatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736983 lncRNA upstream 35840 12789545 ~ 12805543 (+) False G1517410
TU1736984 lncRNA upstream 35840 12795312 ~ 12805543 (+) True G1517410
TU1736981 lncRNA upstream 55408 12774212 ~ 12785975 (+) False G1517409
TU1736982 lncRNA upstream 55408 12783562 ~ 12785975 (+) True G1517409
TU1736980 lncRNA upstream 61014 12774212 ~ 12780369 (+) False G1517409
TU1736996 lncRNA downstream 2214 12856514 ~ 12877270 (+) True G1517422
TU1736994 lncRNA downstream 10230 12864530 ~ 12865350 (+) True G1517420
TU1736992 lncRNA downstream 26436 12880736 ~ 12881992 (+) True G1517418
TU1736990 lncRNA downstream 44510 12898810 ~ 12902980 (+) True G1517416
TU1737029 lncRNA downstream 70099 12924399 ~ 12924636 (+) True G1517452
XM_036951353.1 mRNA upstream 11833 12749923 ~ 12829550 (+) False LOC110527205
XM_036951354.1 mRNA upstream 11833 12749962 ~ 12829550 (+) False LOC110527205
XM_036951355.1 mRNA upstream 11833 12749997 ~ 12829550 (+) False LOC110527205
XM_036951356.1 mRNA upstream 11833 12750049 ~ 12829550 (+) True LOC110527205
XM_036951298.1 mRNA upstream 187627 12622325 ~ 12653756 (+) False LOC110497015
XM_036951326.1 mRNA downstream 20177 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA downstream 20183 12874483 ~ 12879111 (+) True LOC110495518
XM_021570809.2 mRNA downstream 28211 12882511 ~ 12885631 (+) True LOC110495515
NM_001165113.2 mRNA downstream 31795 12886095 ~ 12898735 (+) True cd3z
NM_001171859.1 mRNA downstream 220764 13075064 ~ 13080819 (+) True gp91phox
TU1736637 other upstream 900278 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1197625 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1206404 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1748829 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1824294 11016765 ~ 11017089 (+) True G1516637
TU1737033 other downstream 80354 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 83223 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 332801 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1580462 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1644486 14498786 ~ 14499137 (+) True G1519538

Expression Profile