RNA id: TU1736996


Basic Information

Item Value
RNA id TU1736996
length 549
lncRNA type read_through
GC content 0.34
exon number 2
gene id G1517422
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12856514 ~ 12877270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGGAATATTATAATTTAttgtttgaaaataaaatacagaaatgaaGGCTCCAAATGCTAACCAAAGTCAGTTATATAAATAGAGTTTTTTGCAAATTTTTAGAAACATTTTGCTAATATTTTACAAAGATTATTCATTTTGCAAACCTGCCTAATTTGGTTGTGTTATCTACATATCTATCATATTTTTTTATTAGGATTAGGCATATTACACCTATTAATGTTGTGGCAATGACAGACCAATTGtaacgacttccaccgaagtggttccctctccttgttcgggtagctttcgacgtcaccggctttctagacgccaccgatccatgtttcatttttccttttgttttgtctgtttacacacctggttcccatctcataattatgttccttatttaaccctctggtttccctttctgttttgtgcgtgattgtcttTCGTGTATTCCggtgtgttgtattttgagtcCTGTTTTGTCCTTGTTTGGAACAGGATTTTGTTACGTTTTGGATTGAGTAAATCAGTGATTGTTACTCatatttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736991 lncRNA upstream 2214 12841383 ~ 12854300 (+) True G1517417
TU1736983 lncRNA upstream 50971 12789545 ~ 12805543 (+) False G1517410
TU1736984 lncRNA upstream 50971 12795312 ~ 12805543 (+) True G1517410
TU1736981 lncRNA upstream 70539 12774212 ~ 12785975 (+) False G1517409
TU1736982 lncRNA upstream 70539 12783562 ~ 12785975 (+) True G1517409
TU1736992 lncRNA downstream 3466 12880736 ~ 12881992 (+) True G1517418
TU1736990 lncRNA downstream 21540 12898810 ~ 12902980 (+) True G1517416
TU1737029 lncRNA downstream 47129 12924399 ~ 12924636 (+) True G1517452
TU1737031 lncRNA downstream 51654 12928924 ~ 12929968 (+) True G1517454
TU1737037 lncRNA downstream 70101 12947371 ~ 12956518 (+) True G1517458
XM_036951353.1 mRNA upstream 26964 12749923 ~ 12829550 (+) False LOC110527205
XM_036951354.1 mRNA upstream 26964 12749962 ~ 12829550 (+) False LOC110527205
XM_036951355.1 mRNA upstream 26964 12749997 ~ 12829550 (+) False LOC110527205
XM_036951356.1 mRNA upstream 26964 12750049 ~ 12829550 (+) True LOC110527205
XM_036951299.1 mRNA upstream 202758 12622325 ~ 12653756 (+) True LOC110497015
XM_021570809.2 mRNA downstream 5241 12882511 ~ 12885631 (+) True LOC110495515
NM_001165113.2 mRNA downstream 8825 12886095 ~ 12898735 (+) True cd3z
NM_001171859.1 mRNA downstream 197794 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 225359 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 255847 13133117 ~ 13134843 (+) True LOC118941099
TU1736637 other upstream 915409 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1212756 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1221535 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1763960 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1839425 11016765 ~ 11017089 (+) True G1516637
TU1737033 other downstream 57384 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 60253 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 309831 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1557492 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1621516 14498786 ~ 14499137 (+) True G1519538

Expression Profile