RNA id: TU1736994


Basic Information

Item Value
RNA id TU1736994
length 501
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G1517420
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12864530 ~ 12865350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtaggtgagtcccCTGAAGATAGCCTACCTGAGTAGCTCTTCCAGAACTCCTCCTGCATAAAACAAGAGAGAGGGCTATTTAAAAAGACTCTAATGTTCTGGGACAAATATGGAGAACCTACCTCCTCAGATTCCATCTGATCATTCAGTTTAAACTCACCAATTGTTCGGGGAGGGTGAAGATCTCCCGTGCCTCCTCGTAGCCACATTGCTCCTCCAGACACTCTCTCTCCAGGTCTCCCAGTCTCAGCTCCTCCAGCAGGCTGTTAGCACGCCGCGACCGCTGATGATGGAGCACCTCATTGGCCTCCTGTGTGCTCAGGAACACTGGAGCTGCTCCAGGGAGTCCGGTGCAGGCTGGGATATAGAGGACTAGCAGGATAAGGTGTCTGAGCTGCACTTTCAGAGCGTCCGTGGTCGTAGACGACTCCATTACTGAGCTCTCAGGGCTCAATCCAAGTTCAGTCCTCCCACAAACACATActccacaaacacacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736991 lncRNA upstream 10230 12841383 ~ 12854300 (+) True G1517417
TU1736983 lncRNA upstream 58987 12789545 ~ 12805543 (+) False G1517410
TU1736984 lncRNA upstream 58987 12795312 ~ 12805543 (+) True G1517410
TU1736981 lncRNA upstream 78555 12774212 ~ 12785975 (+) False G1517409
TU1736992 lncRNA downstream 15386 12880736 ~ 12881992 (+) True G1517418
TU1736990 lncRNA downstream 33460 12898810 ~ 12902980 (+) True G1517416
TU1737029 lncRNA downstream 59049 12924399 ~ 12924636 (+) True G1517452
TU1737031 lncRNA downstream 63574 12928924 ~ 12929968 (+) True G1517454
TU1737037 lncRNA downstream 82021 12947371 ~ 12956518 (+) True G1517458
XM_036951353.1 mRNA upstream 34980 12749923 ~ 12829550 (+) False LOC110527205
XM_036951354.1 mRNA upstream 34980 12749962 ~ 12829550 (+) False LOC110527205
XM_036951355.1 mRNA upstream 34980 12749997 ~ 12829550 (+) False LOC110527205
XM_036951356.1 mRNA upstream 34980 12750049 ~ 12829550 (+) True LOC110527205
XM_036951299.1 mRNA upstream 210774 12622325 ~ 12653756 (+) True LOC110497015
XM_036951326.1 mRNA downstream 9127 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA downstream 9133 12874483 ~ 12879111 (+) True LOC110495518
XM_021570809.2 mRNA downstream 17161 12882511 ~ 12885631 (+) True LOC110495515
NM_001165113.2 mRNA downstream 20745 12886095 ~ 12898735 (+) True cd3z
NM_001171859.1 mRNA downstream 209714 13075064 ~ 13080819 (+) True gp91phox
TU1736637 other upstream 923425 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1220772 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1229551 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1771976 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1847441 11016765 ~ 11017089 (+) True G1516637
TU1737033 other downstream 69304 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 72173 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 321751 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1569412 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1633436 14498786 ~ 14499137 (+) True G1519538

Expression Profile