RNA id: TU1736990


Basic Information

Item Value
RNA id TU1736990
length 4171
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G1517416
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12898810 ~ 12902980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGTTTATAACAAAGTTACAGTAAGAGATTTTTCATATACATttgtaagtaaaaaaaaaaacgtaatccCCCAAATACAGCAGACAAACAGGTCGACAAGATGGGACATAGCTAAACGACCACGGTCTCCCTACGTTGTTCCCGTGACAACAGTGTGGCGTGATAGTAGTTGATATAGCAGTAGTAAGCTAGTATACTGTTGAGTGGGTGTGTTCATCATCTATGTAGTCTGCCAAGTAGTGACATCACACCTTGCATTGCCACAACCATGGGTGTCACCACCTAGTGTTAGTGTGACAACTGCTACCTCACTAAACGAGACAGGAGGAAGTAGGGACCAGATTTGGAGTGGTGTACTGTAATCCGTTATGTTATCAGAAAAAATCTTGTAATCAGAttatacttttgaaaaactagatgagtACTTCTTGGTTTACAAAAATGTTAcattgacacctttctgttttatCAATTACATTAAATTAGGCATTGAAAAGCATTTACGTTTATTTcccctgagcgagtctgaccacaagtcagagaccactatgacacAAATGTGTTTGGATCATTTTTGTCaacttctaatgcctcttaaggggaaagtaatctaaaagtaatcaGATTGTTACTGAGTAATCTAAGTTAACTGTTTACAATTTCAGATAACTAGTagcggattacatttagaaagtaacctacccaactgTGTGGGTGTTAGAAAAAGATATGCAGGACTAcacgttttcttttttttgttaaaaaaaagtattaaatCACAATACACAGGCAGTGAATCCTAAAACATACAAAAATACCTTACATTTGACCATCTACCAACAGTAAGATCATTCTGCATTGACATCCATACtgaatgagaaaaaaaacaattaagcTCTTTTCAAAACACATTTTCTGCTTGAAGATATCTTCCCTGAAATGTACCATAATATACATTGCGCTTTGGATGCCAGTGCTTGGTTCTGTATCGGTCTACTACAGTATAAATCCGCTGTAGGGACGGGAGTAGAAAGGGAAGCGTGAAGAGAGTGGGAAAGACCGTCAGAGGTCGGGATTCAATCCGGTCCTAGGTTATAAAGGTATTACgtattttaaaggcaatgttccctgCTTTTGCAGAGGTCCCATTCACGATAAATGCTGCATATGTTCAGCTCAATCAGAAAGTGCCTTTAAAAGCCACAACGCCTATAACCCTGCGATCGATTGAATCCCAGCCAGAGTATTCTTTGGTATTTGTGTAGATGAAACATTTACTTTGGAATACAGCTGGAGGAAAATATCTGCCCTCTACTTGACGTAGCAACAAAACAAGCAGATGTTAAGGGGTGGGCAATCATTTAGACTCACATCGGGATTTCAAAATTCAGCGGAGGGCCGCACTTTTTTGGGGGCCGATTTGTTCGGGCAAAAGCAATTTGTGTGCCAGAAAAAGGGCAGTTATTTTAAAACGTAAAAGGTCCATTATAATTTAAAGTTGTAAACGTTAAGTTTCCTGGAGTGTTTTTTTCCTCTGGCCGTATGTTGCCGACCCCTGCATTACTTGGCGTACAAATAAAACTAAGACAATGTGTAAGAGATGTGATGACTAACTGCACAACATTCAGGTAAAGCGACTACAAAGGACAGCAGCACCACTgatctaagtgtgtgtgtgtggtagagcgTTATGTCTTTGGTTTCTTTTGAGATGCTGCCTCCTGGTGTTGAATAGGTCCAACAGTCCCAGATGAACCCAGCACTAGacagcctgccccccccccccccccaagactgGAACCATCAGTTAGGATGTCAGTAAAGTTTTAAAAACAGGTTTTCTAACCTGCATTAACAAGCAGTAGTAGTCTGCAGATACCATATATCCCATCCATTAAGGccacaaaataaaacattttctccCTTGTGATGTAAACATAAAGGCATGAAAAGTACACATTGTGAAAACTTCTGGCTTTACATGTTTTTGATAAAACATCACACAACACAAAAGTAAAAAACAGAACGCAGTACATTTCCTTAGTTACAAGAGGGCCATAATGGAAACAAGCATTTGGACTTTGTGTTTATATCCTCAGTTTGGTATGTGTATCTGTTGCCAGgtcaaacaaaaaaaatcatggattttaaaagttgtcaaatcaaatcattaAACTGCAAGTCAACAGGCCAGAAACAGATCAGTCCACACCCTGTGGTTTACTTTGGTCCAGAGTCACACTTAAACATTTCTATCCTACAGAGGATGTTAAAGATAATGCACTACATTCAATTACAAGAACCTACTAGTTCAGATAGAAAACAGGAATAtttcatgtatatatatattacttgcATGTGAATATCGAGCGCTAGACGTAAAGTAAAAATGGCCCTCGGATACATATTTCAAAAACTTCTCAATATAGCAGAGCAAACCCACAACAAAAAGACTCAAGCAGAGATACAACTACATTTCCCATAAGGCTTTGCAGGAAACCCCcagaacaaacacacaccaccaaGAAAAGAAGATCTACCCATCAAACCAGCTACAAAATGAGAACGCTAATGCTTTGGTATGTAGGATCAGACAAGAATAAAGTACCATTTGGGTGAATACATGACATAATAATAGCAGTAGTACTGGACACTGCAGTTACAGTGCATGTGGAGTCAGCTCATGTTGTGTATCAAGATATGATTCTCTGCTGTCGTCACCATTTCAAACGTACAGCAAAGCAACAAAAAGACAGGTCAACATATCTACATTCTTAGAATTTATGGTTTCAGTTTTGCTTGACTATATTGTTTTCTTGCTGCTGAGGTATTTCAATATATTATGTTGAGTCAGTACTGAATGCAGTACCCGGGGCTCTAGTGGCAGCATATTTGGTTTTACGAGAAAGAATAAGCTCAGAGAAGGCCAGACCTGGACAATCTCCTTTAACTTGTACATGCAGTGACTCACTGGGAAATGGCTGTCCTGAGAATTACTTCAAGATCATTACTCTTGTAAATACCTTCTTGAACTCATGTAATCCAAGGCAGATTCAGTATGGGCCATGCAACCCCACtatactactgacaccttacCCTACCTTCTCCAGACACTCTTTTTGGTATGCTGCCTGTCTTCTATAGACCTCGGCATAAGGGAGGAGAATATCAGAGAGAAACATCTTTGTTAGTCTTTGGAAAGTCCCCTTCAAAATATTGCATTAATCTCTCCCGCTCTGGAGAGGTCCATTAGATAAATCCCTACGCTACATTACGctagggtgatgataatagtgtACTAGACTTAGCTCTATAATATTTTTTGGTTGGATAAAAGGTTGGATAAAGGACATTCCAAGTTCTCTTGAAGTCCACTGTTTGTAACTCTTCCCAGAGACTGCAGTAAAGCTCTTCCATAGCAAGCCTGCACCCAGGCTCTCTCACGGCCTAGTGATTCTTTTTAAAGAGTTGGAACTATGTTGAAAAACATGTTAAAGCAACAAAACTTTTAATAAAAGTTTTGAAAAATGTACAAACGGCAAATATCAGAGCACACAACTAACCGCACAAAGAACATTTTAGGTCACATGGGAAAACAAGCAGAGAAATCTAATCTTTAGTTGTAAATCTGATGTCAACGGTCCAGGCCTGTACAACACGCCCTCAGGTAAAACTTAAAATTAGAGAACCTAACACACAGATCATCATGAGATCTCTCTAGAAGTTAAACCAAGTCAGTTTCATTCAATACTCAGCAAAATAAAATCAAACGCACATTTTTGGTTTTAGAAGCAGTTCTGAGGAAAAAGAGATTCTATTGCCAAATCTCAATCAATCTTTGAAAGGACCGTTAGGCCCCCTTGTGGCAGAGATAGGGAGGAAAACATCTTAAGAATATTTTTCCAACAACAACTTTTTGGTGGTAGCAAAAAGAACAAAGATTAAATAACGACCAATGAAGAGGAAGAAATGGGGAGCGACCCGCCCCGCGAGTTCATTCATTGGGCCTTAGAGGCTCTGACGATGGTGTTGACTGGTGTAGTTGCCGTGGTGATGGTGTTGGTGCCAGCGGTGAGTTGCAGGCTGAGGGCACTGGCAGGGATAAAGCTGACAGGGTTACTACCCAATAAGGACAGGCTCTGGGGGTTCAGGAAGAGTGGCGTGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736992 lncRNA upstream 16818 12880736 ~ 12881992 (+) True G1517418
TU1736996 lncRNA upstream 21540 12856514 ~ 12877270 (+) True G1517422
TU1736994 lncRNA upstream 33460 12864530 ~ 12865350 (+) True G1517420
TU1736991 lncRNA upstream 44510 12841383 ~ 12854300 (+) True G1517417
TU1736983 lncRNA upstream 93267 12789545 ~ 12805543 (+) False G1517410
TU1737029 lncRNA downstream 21419 12924399 ~ 12924636 (+) True G1517452
TU1737031 lncRNA downstream 25944 12928924 ~ 12929968 (+) True G1517454
TU1737037 lncRNA downstream 44391 12947371 ~ 12956518 (+) True G1517458
TU1737039 lncRNA downstream 45327 12948307 ~ 12948739 (+) True G1517459
TU1737045 lncRNA downstream 57161 12960141 ~ 12980331 (+) True G1517465
NM_001165113.2 mRNA upstream 75 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 13179 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 19699 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 19699 12874483 ~ 12879111 (+) True LOC110495518
XM_036951354.1 mRNA upstream 69260 12749962 ~ 12829550 (+) False LOC110527205
NM_001171859.1 mRNA downstream 172084 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 199649 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 230137 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 487049 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 547177 13450157 ~ 13451678 (+) False LOC118941043
TU1736988 other upstream 26647 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 957705 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1255052 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1263831 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1806256 11086085 ~ 11092554 (+) True LOC118941092
TU1737033 other downstream 31674 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 34543 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 284121 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1531782 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1595806 14498786 ~ 14499137 (+) True G1519538

Expression Profile