RNA id: TU1737029


Basic Information

Item Value
RNA id TU1737029
length 238
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1517452
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12924399 ~ 12924636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAAAATCTTGTTTATCCAAGCCATGTTTTTTACTTAGGTCCTGGAAGTTATCTAGGTCCCCATTCCTTATAATTGTACTGAATGATGTGATGCCTTTCTGCGTCCATTGTTTAAATCTGCTGTCCTGAGTTGCAGGGATGAAGCTGGGGTCGTATGCGGGCCAACTCAGCAGTTTGATCTCTCTGTCTAAATTATTTTGCTTAACTACCCTAAACCATCTCTTCAGAGAGAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736990 lncRNA upstream 21419 12898810 ~ 12902980 (+) True G1517416
TU1736992 lncRNA upstream 42407 12880736 ~ 12881992 (+) True G1517418
TU1736996 lncRNA upstream 47129 12856514 ~ 12877270 (+) True G1517422
TU1736994 lncRNA upstream 59049 12864530 ~ 12865350 (+) True G1517420
TU1736991 lncRNA upstream 70099 12841383 ~ 12854300 (+) True G1517417
TU1737031 lncRNA downstream 4288 12928924 ~ 12929968 (+) True G1517454
TU1737037 lncRNA downstream 22735 12947371 ~ 12956518 (+) True G1517458
TU1737039 lncRNA downstream 23671 12948307 ~ 12948739 (+) True G1517459
TU1737045 lncRNA downstream 35505 12960141 ~ 12980331 (+) True G1517465
TU1737047 lncRNA downstream 37693 12962329 ~ 12968558 (+) True G1517467
NM_001165113.2 mRNA upstream 25664 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 38768 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 45288 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 45288 12874483 ~ 12879111 (+) True LOC110495518
XM_036951356.1 mRNA upstream 94849 12750049 ~ 12829550 (+) True LOC110527205
NM_001171859.1 mRNA downstream 150428 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 177993 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 208481 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 465393 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 525521 13450157 ~ 13451678 (+) False LOC118941043
TU1736988 other upstream 52236 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 983294 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1280641 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1289420 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1831845 11086085 ~ 11092554 (+) True LOC118941092
TU1737033 other downstream 10018 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 12887 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 262465 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1510126 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1574150 14498786 ~ 14499137 (+) True G1519538

Expression Profile