RNA id: TU1737033


Basic Information

Item Value
RNA id TU1737033
length 1573
RNA type TUCP
GC content 0.51
exon number 2
gene id G1517456
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12934654 ~ 12936278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTTGGTCTGGGTGTTCAGATCTTTGGTGTGCTCCACTGTTCTCTAAATGCAGGCTAACTTCTGCCAGGGCCTCAGAACGGCTATGACTGGTCTCAGTGAAGTACAACTGCTATTCTTGCATTCGTCAAACTTTTCACCTAAATCCAATTAAATGAGTTCACAGAGCCCTAAAACCTGACTGTTAAAAATCGAAGCGTCTTTCACAGAGTGGTTGGTCATTAATTCTACATCCAACAACAAGAGAGTTCGCAGGCATTATTATCTAACAAGATTGGACCGAAGAACAGGTGAGTATATTGACCTTTCAGTGACTCAGTCCACACAACAACAGTTGTAGTTCTACAGAGAATCTATTGTTATTGTTCAAGACACTttgcaagtttttttttttttttcatcttgTCAGATTTTCTGCGTCAAAAGGAATCCATCTTGTATCCCGACCTCGGTTCTGCTCTGAAAGAAAACCTCACAGTCAAATGCTGCATCTCTGATTCCCCGCAGAGAGAATGTAGTCAGAACATGGTCCCTGCCATATCAGCAGTGGATAGAGGTGGCAGCAGTGTCTGTCCAGCAGTGTCACTGTCATTTGGCAggcaagggaggggggggggggggggggggtagacacaAAGGACTCATGTCCCAGGCCGGTGCACTCACAAAAACACATCATTATGTTAGTATATTAAGGAGGTATATAAAAAGGTCCATCCATGAGTTAACATCCTCATTTTAGCCTGGAGTAATtcctgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtatgtgTGCTAACTGGTCACACCATGTTGCCCTGTGTGCCAGTGGTTCCAGGCAGTAAAGGCACAGCCACTTCACTCTGCTCcacactctctgtctccacctctgtctctACCACTGTCTCTCCCGGAGCACTCCTGTTGGCTACTGCCTCCATCTTCTTAGCCAGGTAGTCATCTAACTGGCTGCTCTTCTCCAGCCCTCCTTCCTCTAGCTCCTCCTCCAGCTGTACATAGGGGCTGTGTTTCAGGTGGTTGGGCAGGCAGGGCACCAGATGCACTTGTCCGTTGTCACCCAGCATGTTCACGCACGTGTAGAAGCCCTGGGTGGATGATGGGGGTGGGGCCTGCTGGTCCGGAGGCGGGACAGGGGTGGGATCCACCATCATGCTGTAGTCAGTGCCCGGGAAGACCAGAAGCTCTGACTGGTCGGGGTTTGCTGTTGGCCATTCCCACGGGGTCGGGAAGGCTTCCACTGGAGCCTGACAGTAAGGGGCGGGGACTGGGGTGTAAGAGGCGGGGACTGGGGTATAAGGGGCGTGGCTGGAGGTGGTCTGGACCAGTAGTTGGCTGTGGATGGCCATATCATAATCCTCCTTCCGGACTGCTAGGATCCCCAGGGGAGCCTGGAGAGACTGGTTGTTGTCCATGCTGACAGAGTCCCAGACCTCCTCCTCGCTGTAGCTTGGGGGCTTATAGCCATGGAAGGAGATGAAATGACGGTTGATCTCATCAAAGCCCCCTTtctgagagagaaggaaggaggagaaagaTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737031 lncRNA upstream 4686 12928924 ~ 12929968 (+) True G1517454
TU1737029 lncRNA upstream 10018 12924399 ~ 12924636 (+) True G1517452
TU1736990 lncRNA upstream 31674 12898810 ~ 12902980 (+) True G1517416
TU1736992 lncRNA upstream 52662 12880736 ~ 12881992 (+) True G1517418
TU1736996 lncRNA upstream 57384 12856514 ~ 12877270 (+) True G1517422
TU1737037 lncRNA downstream 11093 12947371 ~ 12956518 (+) True G1517458
TU1737039 lncRNA downstream 12029 12948307 ~ 12948739 (+) True G1517459
TU1737045 lncRNA downstream 23863 12960141 ~ 12980331 (+) True G1517465
TU1737047 lncRNA downstream 26051 12962329 ~ 12968558 (+) True G1517467
TU1737048 lncRNA downstream 27937 12964215 ~ 12970187 (+) True G1517468
NM_001165113.2 mRNA upstream 35919 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 49023 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 55543 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 55543 12874483 ~ 12879111 (+) True LOC110495518
XM_036951353.1 mRNA upstream 105104 12749923 ~ 12829550 (+) False LOC110527205
NM_001171859.1 mRNA downstream 138786 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 166351 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 196839 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 453751 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 513879 13450157 ~ 13451678 (+) False LOC118941043
TU1736988 other upstream 62491 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 993549 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1290896 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1299675 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1842100 11086085 ~ 11092554 (+) True LOC118941092
TU1737034 other downstream 1245 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 250823 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1498484 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1562508 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1620048 14556326 ~ 14557346 (+) False LOC110495481

Expression Profile