RNA id: TU1737034


Basic Information

Item Value
RNA id TU1737034
length 4762
RNA type TUCP
GC content 0.46
exon number 2
gene id G1517457
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12937523 ~ 12942494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAAAGCCGATGACTAGCAACAACATGACCCCAACACCGGTCACCAAAAGCAGAGCCAGCAGCTTATCTGTAAGGGACAAAGACAGCACACATCTAGATCATTCCGTATGCCATATTACTCCATTCCATATGCCATATTACTCCATTCCATATGGGTCATATAACAGTGCTTCAGATTAGGAGTTGACTGTGGGTAGGTGCAGACAGTAACTGAATCATCAGACAGTTAAGAGTCCCTACCGGGGGTAGATTTGACTGGGACACAGAGTAGGACAGGGGTGCTCCACTTGCTCCAGAGGCCGTTGTTGCGGGAACGGCATCTCACCCTGACAATGTACTCTCCTACCGGCAGATCCAGCAGCTCCAGACAAGGCTCTCTCAGCAAGCCCTTCACCTGCAGACACACAGGGGGCGATAGTGAGCTGTCAGTAGCAGTTACAGTACACATacatcatttagcagatgctcttatccagagcaatttacagtagtgagtacatacaatttcatacatttttcatacgggtcccccatgggaatcaaacccacaaccctagcgttgcaagcaccatgctatACCAAATGAGCTACACGGGATAGAGGTGACAGAAGGTGATGAGTAGTGTGATACTGGTTAAAGTGACAGTTTAAAAATCCGATACTGTTGAAATAATATGGTACTGTTTAAAAAAAGATGTTTCACCGTTCAGCCAGACTAAACCATGAAGCCATAGAGAGCTGCTGCgtttctgtttgtttctgttctttctcttctctcatctGACAAAGAGCCAGGATCATCGGTCGTAACGTGGGTAACAGACAAACTCCCGGTTTAACTGTGAAATAAGCACATCTTCCTCTTAAAGAATCAATCAAGGACATGACATGCTTCCCACGTCACAAGCTTAACACCCTCAAATGGAGTTGATAAACACTGCacctacacccctctctctctctctctttctctctctctctctctccctctctctctctctaccttccagtTGTTGGGCTCGGTGATGCGTCGGTACTGCAGCTCGAAGACCAGGGTGATCCAACCGTACTGGATGTGGGAGGGATTGGGGTAAACCCAGGACACCATGGCGGTGCGGCCAGCTTCCTCCTCCGTCTCGTTCAACAGGGTGTAGGTCAAGTTAACCGGAGCCTCTGTCTccactgcagacagacagacaagaaaaCTGCATGGTGTGGGCTTGTTATGGTTGTATGCTTcacagggagagaagaagagctaGAACGTAAATAGAGAAACAATGAGATGGGAGGATGGTGAAAGGAAAAGACCTAGGCTGGCagtcagggggaggggagaatACACAATGAACAGCAAACAGGATGTGGAGGGACAACAGAGACAATAAGCAACATGCTGAGGTAATGGAGAAGTAAGGGGGACAGAATGTGTCTGATGGGATCAGATGTGCCCTGCTGGGAGGGGACTAACTCCCATTGGACTGGGTTGAAATGAGGAAGAGCTGACGTCACATAAACAGGGAGAGGAGGTGTGGCCGACGCCAGACACACAGGAAGAGACATCGCAAATATCAGACACAACAGTGGGTTAACACAACAGTTGTAGGTTGAgccgaaatagcaccctattccatatactatagtgtactgaaatagcaccctattcccctctGCGCCTGAGACCCCCATGCACCTCCATGGCCCAGTgtatcctgtgcctgctccacacaccaggcttccagtgcatctccccagtccggtgagacctgttccggttccacgcaccaggcctccagtatgtctccccagcctggtaaggcctgtggcagctccacgcaccaggcttccagtacgtctcctcagtccggtgagacctgttccggctccacaAAGGAAGCCctcagtgatgatccatggcccgaagcctccagtgatgatccatggcacgaagcctccagggaTAAtccgcagtccggagcctccagcgacggtccccaggcCGGAGACTACAGAGGTttcccagtccggggtcggcgacgagggtccccgcaccagaggcgccaccaaagtggggggaACCAGAGATGGAGCGGGGTCTATGCCCTGACCACAGAGAgacattttatttctctatttggtgaggtcagggtgtgatgtggggtgggcattctatgttttgtatttctttgtgtttggctgaGTGTggttctgtcacgttctgacctttatttcctttgttttgtctttatttagtatggtcagggcgtgagttggggtgggcagtctatgtgtgtttttctatgttttttcatttctatgtttggcctgatatggttctcaatcagaggcagctgtttatcattgtccctgattgagaaccatatttaggtagcctgggtttcaatgttggtttgtgggtgtttgttgccacacggtactgtttcggtttggttatTTCACGTAttagtttattgtttttgtatttcatagtgttcagtgcttttcttattaaaatcgtcatgaacacttaccacggcgcatcttggtccgatccttactcctcttcagacgaagaggaggaaatctgccgttacagaaacacccactaacagaggaccaagcggcgtggtaacgggcagcagcagcagcagcagcaggagaggcaacGATATCTGGACTATGTTACTagttgggaggagatagacaggtggtcggtcgacccaaggagagtgccggagcccgcctgggattctctggagcagtgtgaggagggatACCGGCGAATGGAgtcagcacggcggcgcggaaggaagcccgagacgcagccccaaaaatgtcttgggggggcacacggggaatttctatgtttggcctgatatggttctcaatcagacgaagaggaggaaatctgccattacaggttcccaatcagaggcagctgtcgatcgttgtctctgattgggaatcatacgtaggtagcctttttcccacctatgttgtgtgatcttgtttttgtacagcTATTGTAGCCTACGGAACAGTACGTTCGTTTTGGTTTCACGTtgttgttttgttgctggttctcataacttcttcgatataggggttgctcttttaatttttggatgaaaaacgttcccgttttaaacaagagaTTTTGTCCCGAAaatatgctcgactatgcatataattgacagctttggaaagaaaacactgatgtttccaaaactgcaaagatattgtctgtgagtgccacagaactgatgttacagaaaaaacccagataaatatacaatcaggaagtgctgcattttttgaaaccgcctcatggcaatgactccttatatggctgtggaggagctaggagtcagcttaccttttccacgttttccccaaggtgtctgcaacATTGGGacatttgtaggcatatcattggaagattgaccctaagagactacatttaccaggtggtcgcttggtgtcctccgttgcaattattgcgtaatctccagctgcaagtACTTTTCCGTTTGCTactgaggagaaacccaactgccacgaaggatttatcatcgaatagatatgtgaaaaacaccttgaggatgattctaaacaacgtttgccatgtttctgtcgatattatggagttaatttggaaaaaagtttggcgttgtagtgaatgaattttcgttttttttttcttagccaaaagTGATGAACATAACGGCgggatttctcctacacaaataatatttttggaaaaaattaacatttgctatctgagagtctccgcattgaaaacatccgaagttcttcaaaggtaaattattttatttgaatgcttttcttgtttttgtgaaaatattgcctgctgaatgctaggcttaatgctatgctaggctatcaatactcttacacaaatgcttgtgtagctttggttgaaaagcatattttgaaaatctgagatgacagtgttaacaaaaggctaagcttttgtttcaatatatttatttaatttcatttgcgattttcatgaatataaaaacttgcgttatgctaatgcgttatagttgaagtatttttctgtcgatttctcagccaagcaggaTGAACAAACGTGACgtttttcgcctacaaaaatattatttttggaaaaaaggaacatttgctatctaacggagtctcctgagtgaaagcatctgaagttcttcaaaggtaaatgatttaatttggttgcttttcttatttttgtgaaaatgttgcctgctgccagcacagCCTAGaatagcattatgccatgctaaatttacacaaatgcttgtctagcgttggctgtaacgcatattttgaaaatctgagatgacagtgttgttaacaaaaggctaagcttgtgtttgaatatatttatttaatttcatttgcgattttcatgaataggaaagtttgcgttatggtaatgtgcttgaggctatgattacgctcccggatacgggattgctggtcgctagaggttaaataaatatatgcTGACCACAaattacgctgcgccttggtctccttcaaaCAACGCATGTTACAATCACCCTGTACCTATATCAGCCACGTCCAGACAGTGGTCCTTGGAGCTGAACACTCCGTGGGAGGTCCTGGCCATCACGTTCATGCAGTATATGGTCCAGATGGATGTGTGGCCACTGTCAAAGTGACAACTGTTGGGGCCGCCCGTTACATAGTCTGGACACTCACGCCTCGGGCCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737031 lncRNA upstream 7555 12928924 ~ 12929968 (+) True G1517454
TU1737029 lncRNA upstream 12887 12924399 ~ 12924636 (+) True G1517452
TU1736990 lncRNA upstream 34543 12898810 ~ 12902980 (+) True G1517416
TU1736992 lncRNA upstream 55531 12880736 ~ 12881992 (+) True G1517418
TU1736994 lncRNA upstream 72173 12864530 ~ 12865350 (+) True G1517420
TU1737037 lncRNA downstream 4877 12947371 ~ 12956518 (+) True G1517458
TU1737039 lncRNA downstream 5813 12948307 ~ 12948739 (+) True G1517459
TU1737045 lncRNA downstream 17647 12960141 ~ 12980331 (+) True G1517465
TU1737047 lncRNA downstream 19835 12962329 ~ 12968558 (+) True G1517467
TU1737048 lncRNA downstream 21721 12964215 ~ 12970187 (+) True G1517468
NM_001165113.2 mRNA upstream 38788 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 51892 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 58412 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 58412 12874483 ~ 12879111 (+) True LOC110495518
XM_036951356.1 mRNA upstream 107973 12750049 ~ 12829550 (+) True LOC110527205
NM_001171859.1 mRNA downstream 132570 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 160135 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 190623 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 447535 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 507663 13450157 ~ 13451678 (+) False LOC118941043
TU1737033 other upstream 1245 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 65360 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 996418 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1293765 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1302544 11633067 ~ 11634979 (+) True G1517015
TU1737133 other downstream 244607 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1492268 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1556292 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1613832 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1871488 14813982 ~ 14814886 (+) True G1519733

Expression Profile