RNA id: TU1737045


Basic Information

Item Value
RNA id TU1737045
length 361
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1517465
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12960141 ~ 12980331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtattgtgcgtagattgagcaggatttttacaaatgtaatccattttagaataaggctgtaacttaataaAATGTggatcaaggggtctgaatacaaatGCATTGTACAGTAATAGTACGTACTCTAAGGAGTAGGTGAGGCTGTAGGTGATGTTGTCATCACTCTCTGAGTTGTTGTCAAGGGGATGCCACCAGCAGGTGAAGACCTCCATGTTGGGCGAGCGGCAGTAGTAGATGTGGGGCCGGGTCGTCACGGCAACAGCACCTGGGGGATAAAACGAGAGGTTAATGACTCTAACAGTCTCTATGGATATCTGCATTCACTGTCGGCTTTTTCTAACAGACTGATATATTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737037 lncRNA upstream 3623 12947371 ~ 12956518 (+) True G1517458
TU1737039 lncRNA upstream 11402 12948307 ~ 12948739 (+) True G1517459
TU1737031 lncRNA upstream 30173 12928924 ~ 12929968 (+) True G1517454
TU1737029 lncRNA upstream 35505 12924399 ~ 12924636 (+) True G1517452
TU1736990 lncRNA upstream 57161 12898810 ~ 12902980 (+) True G1517416
TU1737071 lncRNA downstream 42719 13023050 ~ 13024564 (+) False G1517489
TU1737069 lncRNA downstream 43443 13023774 ~ 13024564 (+) True G1517489
TU1737083 lncRNA downstream 63369 13043700 ~ 13047381 (+) True G1517501
TU1737088 lncRNA downstream 70896 13051227 ~ 13052078 (+) True G1517506
TU1737093 lncRNA downstream 80037 13060368 ~ 13060660 (+) True G1517511
NM_001165113.2 mRNA upstream 61406 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 74510 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 81030 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 81030 12874483 ~ 12879111 (+) True LOC110495518
XM_036951356.1 mRNA upstream 130591 12750049 ~ 12829550 (+) True LOC110527205
NM_001171859.1 mRNA downstream 94733 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 122298 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 152786 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 409698 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 469826 13450157 ~ 13451678 (+) False LOC118941043
TU1737034 other upstream 17647 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 23863 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 87978 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1019036 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1316383 11642789 ~ 11643758 (+) True G1517019
TU1737133 other downstream 206770 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1454431 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1518455 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1575995 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1833651 14813982 ~ 14814886 (+) True G1519733

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06362136_06376918.mRNA True 2024 mRNA 0.56 9 CI01000299 6362004 ~ 6377235 (-)