RNA id: TU1737071


Basic Information

Item Value
RNA id TU1737071
length 877
lncRNA type intronic
GC content 0.34
exon number 5
gene id G1517489
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13023050 ~ 13024564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaagaaatagactgaaccatagggttgataaagaaatagactgaaccatagggttgataaagaaatagactgaagcatagggttgataaagaaatagactgaaccatagggtcaataaagaaatagactgaagcatagggttgataaagaaatagactgaaccatagggttgataaagaaatagactgaaccatagggttgataaagaaatagactgaaccatagggttgataaagaaatagactgaaccatagggttgataaagaaatagactgaaccatagtgtcaataaagaaatagactgaagcatagggttgataaagaaatagactgaagcatagggttgataaagaaatagactgaagcatagggttgataaagaaatagactgaagcatagggttgataaagaaatagactgaagcatagggttgataaagaaatagactgaagcatagggttgataaagaaatagactgaaccatagggttgataaagaaataggCTGAAGCATAGTGTCAATAAATAAATAGACTGAACCATAGGGTcaataaagaaatagactgaaccatagggttgataaagAAATAGACTGAAccatagggttgataaagaaatagactgaaccatagggttgataaagaaatagactgaaccataGGGTTGCCTATCTGCATTTACACTATTAGGCTAATCATGACCTAGATCACAAACTCTAAACAATATCTTGCTTAAAGTTAGCAATATATTGATGACTTCAATGTCACAAAAAACTCTGTTTTAAACACTATAATGTAGTGTTACACTTAACCCCAGTCTTCCCTACAGTATGTGCTCATGGTGAATCGTGGAGCCTAAATCATGTTGCCTCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737045 lncRNA upstream 42719 12960141 ~ 12980331 (+) True G1517465
TU1737048 lncRNA upstream 52863 12964215 ~ 12970187 (+) True G1517468
TU1737047 lncRNA upstream 54492 12962329 ~ 12968558 (+) True G1517467
TU1737037 lncRNA upstream 66532 12947371 ~ 12956518 (+) True G1517458
TU1737039 lncRNA upstream 74311 12948307 ~ 12948739 (+) True G1517459
TU1737083 lncRNA downstream 19136 13043700 ~ 13047381 (+) True G1517501
TU1737088 lncRNA downstream 26663 13051227 ~ 13052078 (+) True G1517506
TU1737093 lncRNA downstream 35804 13060368 ~ 13060660 (+) True G1517511
TU1737106 lncRNA downstream 65905 13090469 ~ 13091536 (+) True G1517519
TU1737116 lncRNA downstream 112381 13136945 ~ 13137243 (+) True G1517528
NM_001165113.2 mRNA upstream 124315 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 137419 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 143939 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 143939 12874483 ~ 12879111 (+) True LOC110495518
XM_036951356.1 mRNA upstream 193500 12750049 ~ 12829550 (+) True LOC110527205
NM_001171859.1 mRNA downstream 50500 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 78065 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 108553 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 365465 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 425593 13450157 ~ 13451678 (+) False LOC118941043
TU1737034 other upstream 80556 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 86772 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 150887 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1081945 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1379292 11642789 ~ 11643758 (+) True G1517019
TU1737133 other downstream 162537 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1410198 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1474222 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1531762 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1789418 14813982 ~ 14814886 (+) True G1519733

Expression Profile