RNA id: TU1737093


Basic Information

Item Value
RNA id TU1737093
length 293
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1517511
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13060368 ~ 13060660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgccacgttgcaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggagcatgcccaggcgttgtaggaaggtcatacaggcacgtggaggccacacacactactgagcctcattttgacttgttttaagaacattacatcaaagttggatcagcctgtagtgtggttttccactttaattttgagtgtgactccaaatccagacctccatgggttgataaatttgatttccattgatactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737088 lncRNA upstream 8290 13051227 ~ 13052078 (+) True G1517506
TU1737083 lncRNA upstream 12987 13043700 ~ 13047381 (+) True G1517501
TU1737071 lncRNA upstream 35804 13023050 ~ 13024564 (+) False G1517489
TU1737069 lncRNA upstream 35804 13023774 ~ 13024564 (+) True G1517489
TU1737048 lncRNA upstream 90181 12964215 ~ 12970187 (+) True G1517468
TU1737106 lncRNA downstream 29809 13090469 ~ 13091536 (+) True G1517519
TU1737116 lncRNA downstream 76285 13136945 ~ 13137243 (+) True G1517528
TU1737124 lncRNA downstream 97073 13157733 ~ 13158166 (+) True G1517536
TU1737127 lncRNA downstream 104994 13165654 ~ 13165876 (+) True G1517539
TU1737128 lncRNA downstream 105577 13166237 ~ 13166465 (+) True G1517540
NM_001165113.2 mRNA upstream 161633 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 174737 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 181257 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 181257 12874483 ~ 12879111 (+) True LOC110495518
XM_036951356.1 mRNA upstream 230818 12750049 ~ 12829550 (+) True LOC110527205
NM_001171859.1 mRNA downstream 14404 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 41969 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 72457 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 329369 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 389497 13450157 ~ 13451678 (+) False LOC118941043
TU1737034 other upstream 117874 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 124090 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 188205 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1119263 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1416610 11642789 ~ 11643758 (+) True G1517019
TU1737133 other downstream 126441 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1374102 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1438126 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1495666 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1753322 14813982 ~ 14814886 (+) True G1519733

Expression Profile