RNA id: TU1737116


Basic Information

Item Value
RNA id TU1737116
length 299
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1517528
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13136945 ~ 13137243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCATAATGTAATCAAACATTCACAGGAACTCAAACGGGTCCATTTCCAGTTGGCAAGAAATACCTCTTATGCAGTACTGTTGATTCCAAGATTCTTCTAGGTTGTGGGATTCCATGTATCCGGGATAAAACTATTAGATTGTCGACCTCTGAGATACAAGATTCAAATCCTTCAGATACTTGATCTTCCTTGAACCCCTTTCTCCATTGGGCTTATTTAAAGAGTTGCCAACCACATATGGCCTGTGTTCTGGTGTGGTGCTGGGACAACTATTAGGCCAGTGCAGTACTGTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737106 lncRNA upstream 45409 13090469 ~ 13091536 (+) True G1517519
TU1737093 lncRNA upstream 76285 13060368 ~ 13060660 (+) True G1517511
TU1737088 lncRNA upstream 84867 13051227 ~ 13052078 (+) True G1517506
TU1737083 lncRNA upstream 89564 13043700 ~ 13047381 (+) True G1517501
TU1737071 lncRNA upstream 112381 13023050 ~ 13024564 (+) False G1517489
TU1737124 lncRNA downstream 20490 13157733 ~ 13158166 (+) True G1517536
TU1737127 lncRNA downstream 28411 13165654 ~ 13165876 (+) True G1517539
TU1737128 lncRNA downstream 28994 13166237 ~ 13166465 (+) True G1517540
TU1737131 lncRNA downstream 39873 13177116 ~ 13182157 (+) True G1517543
TU1737132 lncRNA downstream 48601 13185844 ~ 13186079 (+) True G1517544
XM_036951879.1 mRNA upstream 2102 13133117 ~ 13134843 (+) True LOC118941099
XM_021570802.2 mRNA upstream 4736 13102629 ~ 13132209 (+) True LOC110495507
NM_001171859.1 mRNA upstream 56126 13075064 ~ 13080819 (+) True gp91phox
NM_001165113.2 mRNA upstream 238210 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 251314 12882511 ~ 12885631 (+) True LOC110495515
LOC118941100 mRNA downstream 252786 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 312914 13450157 ~ 13451678 (+) False LOC118941043
XM_021570794.2 mRNA downstream 337831 13475074 ~ 13503268 (+) False LOC110495498
XM_036951882.1 mRNA downstream 337835 13475078 ~ 13503268 (+) False LOC110495498
XM_036951883.1 mRNA downstream 337835 13475078 ~ 13503268 (+) False LOC110495498
TU1737034 other upstream 194451 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 200667 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 264782 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1195840 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1493187 11642789 ~ 11643758 (+) True G1517019
TU1737133 other downstream 49858 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1297519 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1361543 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1419083 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1676739 14813982 ~ 14814886 (+) True G1519733

Expression Profile