RNA id: TU1737133



Basic Information


Item Value
RNA id TU1737133
length 980
RNA type TUCP
GC content 0.50
exon number 1
gene id G1517545
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13187101 ~ 13188080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagcccatgtctctctctcactctctatctctctctgtccaccattcccttctctcagcccatttctgtctctctcagctctctgtcaACCACTACCTtgtctcagcccatttctgtctctctttctctctgtccaccattcccttctctcagcccatttctgtctctctttcgctctgtctaccattcccttctctcagcccatttctgtctctctctctctctctgtccaccattcccttctctcagcccatttccgtctctctctctgtccaccattaccttctctcagcccatttctgtctctctttctctctgtctaccattcccttctctcagcccatttctgtctctctctctctctctgtccaccattcccttctctcagttcatttctgtctctcttagctctctgtccaccactcccttctctcagcccatttctgtctctctctctctgtccaccattcccttctctcagcccatttctctctctctctctctctctgtctaccattcccttctctcagcccatttctgtctctctctctctctctgtccaccattcccttctctcagttcatttctgtctctcttagctctctgtccaccactcccttctctcagcccatttctgtctctctctctgtctgtccaccattcccttctctcagcccatttctgtctctctctctccgtctgtccaccattcccttctctcagcccatttgtgtctctctctttctttctctgtctaccattcccttctctcagcccttttctgtctgtctctctctctgtcgaccattcccttctctcagcccatttctgtctctctcagctctctgtccaccattcccttctctcagaccatttctgtctctctccctctctctgtccaccattcccttctctcagaccatttctgtctctctccctctctctgtccaccattcccttctatcagaccatttctgtct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1737132 lncRNA upstream 1022 13185844 ~ 13186079 (+) True G1517544
TU1737131 lncRNA upstream 4944 13177116 ~ 13182157 (+) True G1517543
TU1737128 lncRNA upstream 20636 13166237 ~ 13166465 (+) True G1517540
TU1737127 lncRNA upstream 21225 13165654 ~ 13165876 (+) True G1517539
TU1737124 lncRNA upstream 28935 13157733 ~ 13158166 (+) True G1517536
TU1737139 lncRNA downstream 30367 13218447 ~ 13218661 (+) True G1517551
TU1738100 lncRNA downstream 114513 13302593 ~ 13302811 (+) True G1518292
TU1738190 lncRNA downstream 252480 13440560 ~ 13440830 (+) True G1518359
TU1738196 lncRNA downstream 262222 13450302 ~ 13451677 (+) True LOC118941043
TU1738208 lncRNA downstream 279200 13467280 ~ 13519064 (+) True G1518374
XM_036951879.1 mRNA upstream 52258 13133117 ~ 13134843 (+) True LOC118941099
XM_021570802.2 mRNA upstream 54892 13102629 ~ 13132209 (+) True LOC110495507
NM_001171859.1 mRNA upstream 106282 13075064 ~ 13080819 (+) True gp91phox
NM_001165113.2 mRNA upstream 288366 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 301470 12882511 ~ 12885631 (+) True LOC110495515
LOC118941100 mRNA downstream 201949 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 262077 13450157 ~ 13451678 (+) False LOC118941043
XM_021570794.2 mRNA downstream 286994 13475074 ~ 13503268 (+) False LOC110495498
XM_036951882.1 mRNA downstream 286998 13475078 ~ 13503268 (+) False LOC110495498
XM_036951883.1 mRNA downstream 286998 13475078 ~ 13503268 (+) False LOC110495498
TU1737034 other upstream 244607 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 250823 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 314938 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1245996 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1543343 11642789 ~ 11643758 (+) True G1517019
TU1739079 other downstream 1246682 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1310706 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1368246 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1625902 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 1710176 14898256 ~ 14900172 (+) True il8r

Expression Profile