RNA id: TU1739280



Basic Information


Item Value
RNA id TU1739280
length 209
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1519277
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14412806 ~ 14413014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTGGAGAGGAGAGCAAGGGAACTCTGGGAGTTCTCTTTTACTTTGATTTGTGGGCGTCTAGTGGGAACAGCTCTGCTCTTCAGTCTTGGAgaaacatatacacatacacacagacacgaatacacacacacagacacacataaatacatacacacactcaaacacacacacacacacacacacacacacacacacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1739275 lncRNA upstream 12436 14399749 ~ 14400370 (+) True G1519272
TU1739274 lncRNA upstream 13487 14399051 ~ 14399319 (+) True G1519271
TU1739251 lncRNA upstream 56878 14355713 ~ 14355928 (+) True G1519249
TU1739249 lncRNA upstream 60718 14351885 ~ 14352088 (+) True G1519247
TU1739247 lncRNA upstream 62338 14350255 ~ 14350468 (+) True G1519245
TU1739281 lncRNA downstream 51 14413065 ~ 14413329 (+) True G1519278
TU1739282 lncRNA downstream 691 14413705 ~ 14413940 (+) True G1519279
TU1739283 lncRNA downstream 1254 14414268 ~ 14414470 (+) True G1519280
TU1739285 lncRNA downstream 3767 14416781 ~ 14417037 (+) True G1519282
TU1739289 lncRNA downstream 30596 14443610 ~ 14443860 (+) True G1519286
XM_021570759.2 mRNA upstream 432919 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA upstream 432919 13975114 ~ 13979887 (+) True LOC110495485
XM_021570760.2 mRNA upstream 443617 13883956 ~ 13969189 (+) False LOC110495487
XM_021570761.2 mRNA upstream 443617 13957458 ~ 13969189 (+) True LOC110495487
XR_005037558.1 mRNA upstream 601518 13811236 ~ 13811288 (+) True LOC118941229
XM_036951916.1 mRNA downstream 143962 14556976 ~ 14558589 (+) False LOC110495481
XM_021570750.2 mRNA downstream 175637 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 175638 14588652 ~ 14643860 (+) True LOC110495476
XM_021570729.2 mRNA downstream 340422 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 340422 14753436 ~ 14764586 (+) True LOC110495457
TU1737133 other upstream 1224726 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1470312 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1476528 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1540643 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 2471701 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 21748 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 85772 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 143312 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 400968 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 485242 14898256 ~ 14900172 (+) True il8r

Expression Profile