RNA id: TU1739079


Basic Information

Item Value
RNA id TU1739079
length 1315
RNA type TUCP
GC content 0.55
exon number 2
gene id G1519096
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14434762 ~ 14436120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCCACCAGACAGGGCCTGGTCCCCCAACACCACAACAAATCTATCTACCAGACAGGGCCTGGTCCCCCAACACCAAAACAAAGCTATGTACCAGACAGGGCCTGATCCCCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGGTCCACCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCCACCAGACAGGGCCTGGTCCCCCAACACCAAAACAAAGCTATGTACCAGACAAGGCCTGATCCCCCAACACCACAACAAAGCTATCTAACAGACAGGGCCTGATccctcaacaccacaacacaagctATCCACCAGACAGGGCCTGATccctcaacaccacaacacaagctATCCAGCAGACATTGCCTGATCCCCCAACACCAAAACAAAGCTATGTACCAGACAAGGCCTGATCCCCCAACACCACAACAAAGCTATCTAACAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCTGCCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCTGCCAGACAGGGCCTGGTCCCCCAACACCAAAACAAAGCTATGTACCAGACAGGGCCTGATCCCCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGATccctcaacaccacaacacaagctatctaccagacagggcctgatccctcaacaccacaacacaagctatctaccagacagggcctgatccctcaacaccacaacacaagctATCCACCAGACAGGGCCTGATCCCCCAACACCAAAACAAAGCTATCCACCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCCACCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGATCCCTCAACACCACAACAAAGCTATCCAACAGACAGGGCCTgaacccccaacaccacaacaaagccatcCAGCAGACAGGGCCTGATCCCCCAACTCCACAACAAAGCTATCCACCAGACAGGGCCTGGTCCTCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGGTCCCCCAACACCACAACAAAGCTATCTACCAGACAGGGCCTGGTCCCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739285 lncRNA upstream 17725 14416781 ~ 14417037 (+) True G1519282
TU1739283 lncRNA upstream 20292 14414268 ~ 14414470 (+) True G1519280
TU1739282 lncRNA upstream 20822 14413705 ~ 14413940 (+) True G1519279
TU1739281 lncRNA upstream 21433 14413065 ~ 14413329 (+) True G1519278
TU1739280 lncRNA upstream 21748 14412806 ~ 14413014 (+) True G1519277
TU1739289 lncRNA downstream 7490 14443610 ~ 14443860 (+) True G1519286
TU1739300 lncRNA downstream 23088 14459208 ~ 14459452 (+) True G1519296
TU1739304 lncRNA downstream 29224 14465344 ~ 14472844 (+) True G1519300
TU1739312 lncRNA downstream 51372 14487492 ~ 14487872 (+) True G1519303
TU1739076 lncRNA downstream 54342 14490462 ~ 14492116 (+) False G1519095
XM_021570759.2 mRNA upstream 454875 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA upstream 454875 13975114 ~ 13979887 (+) True LOC110495485
XM_021570760.2 mRNA upstream 465573 13883956 ~ 13969189 (+) False LOC110495487
XM_021570761.2 mRNA upstream 465573 13957458 ~ 13969189 (+) True LOC110495487
XR_005037558.1 mRNA upstream 623474 13811236 ~ 13811288 (+) True LOC118941229
XM_036951916.1 mRNA downstream 120856 14556976 ~ 14558589 (+) False LOC110495481
XM_021570750.2 mRNA downstream 152531 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 152532 14588652 ~ 14643860 (+) True LOC110495476
XM_021570729.2 mRNA downstream 317316 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 317316 14753436 ~ 14764586 (+) True LOC110495457
TU1737133 other upstream 1246682 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1492268 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1498484 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1562599 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 2493657 11940062 ~ 11941105 (+) False G1517150
TU1739573 other downstream 62666 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 120206 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 377862 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 462136 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 772849 15208969 ~ 15216244 (+) False LOC110495440

Expression Profile