RNA id: TU1739300



Basic Information


Item Value
RNA id TU1739300
length 245
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1519296
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14459208 ~ 14459452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTCAACTGAAATAGATTCTGATCTACCTACATGCGTTTCTCTCTTAAAGGGGACGTTGTACTTTACTGTATAGAAAGAGATGTTTATATAGGTTCAGATTCCTCCTGGTCTCTCCACTTATCtcccacttctctcctctcttctcttctccactcATCTCTTCCTcgcctcatctctcctctcctcctctcttcctctcttcctgtccactcccctcctcacttctcttctccccttctatccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1739289 lncRNA upstream 15348 14443610 ~ 14443860 (+) True G1519286
TU1739285 lncRNA upstream 42171 14416781 ~ 14417037 (+) True G1519282
TU1739283 lncRNA upstream 44738 14414268 ~ 14414470 (+) True G1519280
TU1739282 lncRNA upstream 45268 14413705 ~ 14413940 (+) True G1519279
TU1739281 lncRNA upstream 45879 14413065 ~ 14413329 (+) True G1519278
TU1739304 lncRNA downstream 5892 14465344 ~ 14472844 (+) True G1519300
TU1739312 lncRNA downstream 28040 14487492 ~ 14487872 (+) True G1519303
TU1739076 lncRNA downstream 31010 14490462 ~ 14492116 (+) False G1519095
TU1739077 lncRNA downstream 31010 14490462 ~ 14492027 (+) True G1519095
TU1739313 lncRNA downstream 34427 14493879 ~ 14494081 (+) True G1519304
XM_021570759.2 mRNA upstream 479321 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA upstream 479321 13975114 ~ 13979887 (+) True LOC110495485
XM_021570760.2 mRNA upstream 490019 13883956 ~ 13969189 (+) False LOC110495487
XM_021570761.2 mRNA upstream 490019 13957458 ~ 13969189 (+) True LOC110495487
XR_005037558.1 mRNA upstream 647920 13811236 ~ 13811288 (+) True LOC118941229
XM_036951916.1 mRNA downstream 97524 14556976 ~ 14558589 (+) False LOC110495481
XM_021570750.2 mRNA downstream 129199 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 129200 14588652 ~ 14643860 (+) True LOC110495476
XM_021570729.2 mRNA downstream 293984 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 293984 14753436 ~ 14764586 (+) True LOC110495457
TU1739079 other upstream 23088 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1271128 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1516714 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1522930 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1587045 12833651 ~ 12872163 (+) True G1517414
TU1739573 other downstream 39334 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 96874 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 354530 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 438804 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 749517 15208969 ~ 15216244 (+) False LOC110495440

Expression Profile