RNA id: TU1739077


Basic Information

Item Value
RNA id TU1739077
length 1566
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1519095
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14490462 ~ 14492116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTTCGAAGACTTTTCCATAACAGAGGAGTGTGCATAGTAACTAGATGTTTTCAACCTATGATATATGTCAATGTATTTACAAATAAGAAACACTGTTCACACTCGAAACCATTCATCAAAGCAGATTTGTGAGAAGTATCTTCATTACCCCACCGCACATGAATACCAGATAACCTCGACGTAGTGCCTCCCTGATTTCTATGGAGAAGGACAGCAGCCATTTTGAAAAGACGACACACTGAACACAGTTGACTTCCAAGACATGTTCAGAGTGTTGTTGTCATATGTTCCTAGAAGAAGAAATGTCTAGCATACCATGTGACAGTCTGTCAAACGGACCAAAATACAGGAGCAAATCATGGAGTTTCACAAAAGAGAAATGTATCTCCACACATAGTGACAAATAAATGCACATCCATTTTGATTCCTCTGAAATTCAACTTAAACCCCTTCAAATATCCAATGGTCCGTAGTGGTACGGGAAAAGGCAAGATTATCCTCATTATTCTTCAAGCAAGTGAGACCAAAGCTAAAATTGTGCTTGTGAAGAAAAAAGATCTGAAATCCACACCACATGATCCACATTAGGGCTTGTTTTAGGGCTTGTTTTAGGGCTTGTTTTAGGGCTTTACCAAGTTTTTTGGTTAGTTTCAGATTGACCAAAATATGATGTCATGAAGTCCAGTTAAGCAACAATAAGAGCTACTCAAAGACCCCAACGTAGTTTTTTACCAGGACTTGATAAAGCCTGGTTGGGAGGTGCTTTAGTGGGGAGATTAGGCCTGTGTTGGGTCGGTCCTGACACAACGCATGTCCCTATAACGTTGCCGTGGTTACGCTGATGTTAACCGTCTCCAAGGGAAcctcagaaagaaagaaagtgagagactGTGCTCTCATACAATCCACAATCATTTCATACATAGTTCTTGTGAGGCCCTATGAAGTAAGATACGATCATTTACGGGATCCGACACGGGTGTTCTGTAATATCTGATATCGTAACATTGTTTTATTGATACTTCATAGTGCTAGCAGCTTCTAAACAGAAACAGTGAGGCAGTGTATTCAGTCCCTTGTAGTGCCACACATTATGCAAATTATTAacctatacacaatgagtaaacTCTGTAAGAGATGTCTATGTCCCCCTCGGTCTGCAAAAATGATTGCTTTTTCAATTCCCCTTTGGTTTAACTTTTCAAAGTGTTGGTATTTTTCTTCAATGTACTGTACTCTGTTGGCTGCTTGTTATATCACTGAGATCAACGTCAATTTCCAACTGTCATACCTGCCCGACCCAACAGAAAACACAGTAATGTTTGATACATTCAAGACAGAGCTCCTTTAAGGTGTGGATTTCTTGTATTCTATGACATTGTGTATATAAATCAAAAATGATAATAAGATGAAGACAATCTAGccacattcataaaaaataagtTTGCATTTTCAGAGTGAGTGGCAAACTTGTTTTATGAACCTTTCTGGTAATCATAATAATGATATTAATGATGATCATAATTAATAATATATAGCACAGAATTATTCCAGGCACTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739312 lncRNA upstream 2590 14487492 ~ 14487872 (+) True G1519303
TU1739304 lncRNA upstream 17618 14465344 ~ 14472844 (+) True G1519300
TU1739300 lncRNA upstream 31010 14459208 ~ 14459452 (+) True G1519296
TU1739289 lncRNA upstream 46602 14443610 ~ 14443860 (+) True G1519286
TU1739285 lncRNA upstream 73425 14416781 ~ 14417037 (+) True G1519282
TU1739313 lncRNA downstream 1852 14493879 ~ 14494081 (+) True G1519304
TU1739569 lncRNA downstream 3483 14495510 ~ 14495716 (+) True G1519534
TU1739572 lncRNA downstream 6241 14498268 ~ 14498607 (+) True G1519537
TU1739590 lncRNA downstream 21005 14513032 ~ 14513428 (+) True G1519555
TU1739596 lncRNA downstream 34711 14526738 ~ 14527008 (+) True G1519561
XM_036951893.1 mRNA upstream 4506 14087058 ~ 14485956 (+) False LOC110495483
XM_036951894.1 mRNA upstream 4506 14087058 ~ 14485956 (+) True LOC110495483
XM_021570759.2 mRNA upstream 510575 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA upstream 510575 13975114 ~ 13979887 (+) True LOC110495485
XM_021570761.2 mRNA upstream 521273 13957458 ~ 13969189 (+) True LOC110495487
XM_036951916.1 mRNA downstream 64949 14556976 ~ 14558589 (+) False LOC110495481
XM_021570750.2 mRNA downstream 96624 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 96625 14588652 ~ 14643860 (+) True LOC110495476
XM_021570729.2 mRNA downstream 261409 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 261409 14753436 ~ 14764586 (+) True LOC110495457
TU1739079 other upstream 54342 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1302382 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1547968 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1554184 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1618299 12833651 ~ 12872163 (+) True G1517414
TU1739573 other downstream 6759 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 64299 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 321955 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 406229 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 716942 15208969 ~ 15216244 (+) False LOC110495440

Expression Profile