RNA id: TU1739573



Basic Information


Item Value
RNA id TU1739573
length 352
RNA type TUCP
GC content 0.48
exon number 1
gene id G1519538
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14498786 ~ 14499137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccaactgtaaagtttggtggaggaggaataatggtctggtactgtttttcatggttctggctaggccccttagttccagtgaagtcaaatcttaacgctacagggtacaatgacattctacacaattctatgcttccaacttcatggcaacagtttggggaaggccctttcctgtttcagcatgacaatgcccctgtgcacaaagtgaggtccatacagaaatggtttgtcgagatcggtgtggaagaacttgactggcctgcacagagccctgacctcaaccccatcgaacacctttgggatgaattgtaacgACGACTGAgagccaggcttaatcgcccaacatcagtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1739572 lncRNA upstream 179 14498268 ~ 14498607 (+) True G1519537
TU1739569 lncRNA upstream 3070 14495510 ~ 14495716 (+) True G1519534
TU1739313 lncRNA upstream 4705 14493879 ~ 14494081 (+) True G1519304
TU1739076 lncRNA upstream 6670 14490462 ~ 14492116 (+) False G1519095
TU1739077 lncRNA upstream 6759 14490462 ~ 14492027 (+) True G1519095
TU1739590 lncRNA downstream 13895 14513032 ~ 14513428 (+) True G1519555
TU1739596 lncRNA downstream 27601 14526738 ~ 14527008 (+) True G1519561
TU1739597 lncRNA downstream 28441 14527578 ~ 14527792 (+) True G1519562
TU1739628 lncRNA downstream 29952 14529089 ~ 14529710 (+) True G1519578
TU1739633 lncRNA downstream 30936 14530073 ~ 14531837 (+) False G1519579
XM_036951893.1 mRNA upstream 12830 14087058 ~ 14485956 (+) False LOC110495483
XM_036951894.1 mRNA upstream 12830 14087058 ~ 14485956 (+) True LOC110495483
XM_021570759.2 mRNA upstream 518899 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA upstream 518899 13975114 ~ 13979887 (+) True LOC110495485
XM_021570760.2 mRNA upstream 529597 13883956 ~ 13969189 (+) False LOC110495487
XM_036951916.1 mRNA downstream 57839 14556976 ~ 14558589 (+) False LOC110495481
XM_021570750.2 mRNA downstream 89514 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 89515 14588652 ~ 14643860 (+) True LOC110495476
XM_021570729.2 mRNA downstream 254299 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 254299 14753436 ~ 14764586 (+) True LOC110495457
TU1739079 other upstream 62666 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1310706 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1556292 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1562508 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1626623 12833651 ~ 12872163 (+) True G1517414
TU1739660 other downstream 57189 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 314845 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 399119 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 709832 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 1257356 15756493 ~ 15816005 (+) True G1520649

Expression Profile