RNA id: TU1739729


Basic Information

Item Value
RNA id TU1739729
length 3402
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1519654
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14672239 ~ 14675705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCATTTGTAACAATGGAATGGaaagaaaacaaaaataacatttacatatGTAAACCGAGAATAGCTCTTTTTAACCACAGTGGTTTTAAATACAACTGGCTTAAGTGGATAAGAGTCTGCAGAAAATTCCCTTCCCAATCAACCACATATGGAGTGTTTTAAAGGTCCGATGTTTTAGCCATTTTCTACTTTTTGTGTCTGTTCCCAACACCCTAGAAACACTCTTAGGGTGAGACAAGCAGTCTAGATGGGTGTAATGCCACATTCATGTGGTATCAGAAGTTCCTATTTCCAACTGAGAAGTTTCACTTGAGCGAACCTCCAAGTCGGAATTTCAAGTGGGAAACTCTGAAAATGTTGTTGCCCAGGTAGGCGAGTTATGATGTTTCACcactgacctttgaccttttcaACCAAAAATAACAAATCAGTTTGACAACTACGACCTCATCATATTGTCAATGTTAAGCAATCTAGCTAACTTTATTATTAGCAACCTTGAtaagctagctaactttattATTAGCAACCTTGAtaagctagctaactttattATTAGCAACCTTAAtaagctagctaactttattATTAGCAACCTTGAtaagctagctaactttattATTAGCAACCTTGATAAGCTAGCTAAAATCCTATTGGTTGAAGAATTTTTCCGACTTCAAAAGCACTTAAACACAATCATGTCGGACTTAATTGTTCCACTTCCCCATTTCCCATGAGCATGTGAAGCCAGCATAAATACACTCTGAGATTAGCCTAGCTAATCCATATTCCTCTTACTCTAAACACAGTCAAGTCTATTGTCCATTATCTTGTTTAAGTGCTGGGTAATTTCCCTACAAAAACTGAgcatttaattattttttaaaatctaatGTGGAATTCATTTGGACAAGTCCTTTGTATCCTTAGTACACCAAAGAAGAAGAGACATTCACGCTGGGTTTTCTGGGATAGGATTTAGTCCTCCAGTTTTCTTCTACTGTGCAAATACAGTGTTACACAGACGTACAGCCAGACAGGCATGCGGACAGACAAACCATGCAGAGAATTAGATGGCGTTAAAGAAATGTTTTGTAAAGGAACATACCAAACCCTGGGGCTCTGAAACTATTCATAGGAATGGTGAATCTGAGAGCAAACACAAAGCAAAGCAACAATAAATACAATGTAAGAACATTATTGAAAACTAAAAGGAGTTATTTACTAGGGATGAGAATAGTTTGAACTACAATGAGACCATGCCAACCCACTAATATCATGACTCCGGTTTCTTGACAACCCGACTAATGTAGCTACGACAGGAAGAAGTGATGTCACAACATTTTCTGAAGTTGAGGTATGCTAATGTACAGTAACCATGGCAACACAGCAGTAACCATGCTATCAAATCAACAACAGTGTGTTATGGTGTCAAAAGTAACCTCGGTATGTCATTTTGGTTGGTCCCAATGAAGTCAAACGCGAAAGCGAAGTGTCTTTAAAATGCCCCATGCTAGTCTAGTCTAGTCAAGCTACAGTGCAGCCAGGAACAATACAGTACAAAAACAAACCAGTGTGCTCCCCTTTTTGTGTTCAGAGTGATGTGTGGAACAGAGACCAAATCCACTGCTGCTGAGTGCAGGGCTGCTCCAACCAGGGACAGTTTAAAACAGTCAACCTCAACTCCCCACATAAGGTTTTTAGAGCTATTTACTGGAGTGAGACCATCTTTGCCATAGCTATTCTCTTTCACAACGTCATAGCTCTCATGTAGGCTACGGATATAATATATTTCTAGGCTTTCCATGTAGAACCTCTCTGTAAACAGGATCATTCTGTAAGTAAATAGACCATTTCTGGAATCATGGTATAAAGTAGAAAGGCTGATCATCCCAATGCATGATGAGGACACTAAGAGCAAGTGGCACATCAACTGTACAGAGTAACAACGCAAAATGACAAATATGCAAATATAAAAAGTATGTTCAAAACTAGAGATTTTCATACATGCCAAAAATAGAATTGTCACCCACTTGAGATGGTTGATTAAGAAAAAGTTGATGATGGTATAGTCAATTGACTAGCTCGATGTGGAAATGATAGTTTCAAAGATGGCAAATTAACACACTTTACAATATGTTCAATTCAATATACATGACAAGATGTTTATAGTAACTATTAACTAAGGTAGTTGCCAAACAATACATTGGAATTCAATAATTATTTAACCAAAAAGGTTGAGACATACATGTTTGATCCGTTAGCTCTCGAACAGTGTGCTTGGTATGAAAAGCCAGTAGTAATACTGTGTATGCCTGCTGTTACTAGTGGTACGAAAGAGCTGGATGCAAACTCATGCTTTGGCTTTTTTTTTGCTCGACTAGTTCTTTTTGGATAACTTTCTAACCTTGCAACCGACAGGTCTTTCTGGTGAGACATGCTTTTTCTCCGTTAGCGATTGGTTATGTGATAAAGGGAAGCTACATAAGGCTAAATGCTAACCTTCAACAGTGCTTTACGAATCAACTGGAAGTTGAACGTTTCAAATGTTTGCTTGCAACTACCTTTTTGAAGCATTTTTACAGAAAAATATATCAATCCAAAGGTATAATGACCTCTAAAAGAGGCTGTGAGAGACAAACGCTGTCTACATCACAATCCTGGTAAACATGCTGAAAGATCATTTTTTCCACCATCCCGTCCTCTGTCAAACAggaaaatgtatttctctctctcccctggtcagGATCATCATTTAAGGCAATCTTCATTTCTGACACAATCCTGAAATCCATCAGAGCTTCACAAAGGCACTCTCTCATTGGTGGATCCTCCATCACAGAACTACCAGCTGCATCAGTAAGGCAAAGATCCAATAGCCTCATCATCCAATAACGGCCAACGCTTGCTCAACGGCCAACCACAGTCAAGTCTACTGTCCTCAGCCAATGACAGCCCGACAATTCTCCTAGGGGCTTTGTTGTCCGCCATCTCTCATCAGTAACCACCATCTCCATCAGTAGCATGTCCTCCATTTAGCGGGACAAAAGCAGGAGAGAAAATAAATGTCCACGCTGTGTGTGACAGCCGGACTTGTCCTGTCATCTGTCTCCATATTTGGCCACGGGGGAGCTCTGTAAAGCACCAGATCTTTCCCTTCAGGAGTAAGACTTCCATTATCCGCCTCCACTCCGAGAACCCACGCCCTGCCTCGGTGCTAGGGTGTCTTCTGGGGCTGCCTCAGTCTGACTGGCAGAAACAAACGGTGAGCTGACCACGCTGAGCTGCCTGGCTGCAGCGCTTTGTCACTTCCGTCCTTCATATCGTATCCCCATTGACTCCCTACTCTGaagcccatccctctctctcattggcAGAGGAGCTGCCAATCAAGGTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739661 lncRNA upstream 115116 14556326 ~ 14557123 (+) True LOC110495481
TU1739633 lncRNA upstream 140402 14530073 ~ 14531837 (+) False G1519579
TU1739630 lncRNA upstream 140402 14530596 ~ 14531837 (+) True G1519579
TU1739628 lncRNA upstream 142529 14529089 ~ 14529710 (+) True G1519578
TU1739597 lncRNA upstream 144447 14527578 ~ 14527792 (+) True G1519562
TU1739837 lncRNA downstream 156454 14832159 ~ 14832358 (+) True G1519738
TU1739852 lncRNA downstream 217747 14893452 ~ 14897145 (+) True G1519750
TU1739888 lncRNA downstream 233786 14909491 ~ 14909694 (+) True G1519759
TU1739856 lncRNA downstream 235891 14911596 ~ 14921517 (+) False G1519751
TU1739855 lncRNA downstream 236926 14912631 ~ 14921517 (+) True G1519751
XM_021570750.2 mRNA upstream 28379 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA upstream 28379 14588652 ~ 14643860 (+) True LOC110495476
XM_036951916.1 mRNA upstream 113650 14556976 ~ 14558589 (+) False LOC110495481
XM_036951893.1 mRNA upstream 186283 14087058 ~ 14485956 (+) False LOC110495483
XM_036951894.1 mRNA upstream 186283 14087058 ~ 14485956 (+) True LOC110495483
XM_021570729.2 mRNA downstream 77731 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 77731 14753436 ~ 14764586 (+) True LOC110495457
XM_021572929.2 mRNA downstream 103385 14779090 ~ 14780827 (+) True LOC110496915
XM_021570724.2 mRNA downstream 117232 14792937 ~ 14799311 (+) False zgc:92380
XM_021570725.2 mRNA downstream 117527 14793232 ~ 14799311 (+) True zgc:92380
TU1739660 other upstream 114893 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 173102 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 236119 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1484159 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1729745 12937523 ~ 12942494 (+) True G1517457
TU1739825 other downstream 138277 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 222551 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 533264 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 1080788 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 1120647 15796352 ~ 15799881 (+) True LOC110495644

Expression Profile