RNA id: TU1739856


Basic Information

Item Value
RNA id TU1739856
length 3179
lncRNA type intronic
GC content 0.34
exon number 3
gene id G1519751
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14911596 ~ 14921517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATACAGGagaagagtcatatcaatagaggagaaggagtcatatcaatacaggacaaagagtcatatcaatacaagagaaagagtcatatcaatacaggagaaagagtcatatcaatacaagaGAGGGAGTCacatcaatacaggagaaagagtcatatcaatacagtaaAAGATTCATATCaataaaggagagagagtcatatcaatacaggagaaggGTCATATCaatagaggagaaggagtcatatcaatacaggacaaagagtcatatcaatacaggagtaagagtcatatcaatacaggagtaagagtcatatcaatacaggagagtcACAATAAAGttaaagagtcatatcaatacaggagaaagattcatatcaatacaggaggaagattcatatcaatataggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggagaaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggagagtcATATCAATAAAGTAAAatagtcatatcaatacaggagaaagagtcatatcaatacaagaGAAGAGTCAtgtcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatagagGAGAAAgtgtcatatcaatacaggagaaagattaATATCAATACAGTAAaagattcatatcaatacaggagagtcATATCAATAAAGTAAAatagtcatatcaatacaggagtaagagtcaTATCAATACaggagagtcatatcaatacaggagagtcACAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaagaGTCAtgtcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatactggagaaagagtcatatcagtACAGGagaagagtcatatcaatagagGAGAAAgtgtcatatcaatacaggagaaagattaATATCAATACAGTAAaagattcatatcaatacaggagagtcATATCAATAAAGTAAAatagtcatatcaatacaggagtaagagtcatatcaatacaggagagtcatatcaatacaagaGAGTCACAATAAAGttaaagagtcatatcaatacaggagaaagattcatatcaatacaggagagtcatatcaatacaggataaatattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggagagtcATGTCAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatataggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagtgGGAGTCATACctatacaggagaaagagtcatatcaatacaggagaaggagtcatatcaatacaggataAtcATATCAATAAAGTAAAATAGtaatatcaatacaggagaaagagtccatatcaatacaggagagtcatatcaataaagtaaaagagtcatatcaatacaggagaaagagtcatatcaatataggagaaagagtcatatcaatacaggagaaatagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcagtACAGGAGAAGAGCCATATCAATAGAGGAGAAAGTGTCATATCAATataggagaaagagtcatatcaatacaggagaaataGTCAAATCAATACAGGAGTGGGAGTCATACctatacaggagaaagagtcatatcaatacaggagaaggagtcatatcaatacaggataATCATATCAATAAAGTAAAATGGtaatatcaatacaggagaaagagtcatattaatacaggagaaagagtcatatcaatacaggagagagagtcatatcaatacaggagagagagtcatatcaatacaggagaaagtgtcatatcaatacaggaggaagattcatatcaatacaggataATCATATCAATAAAgtaaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaacgAGTCATATCAATATAAGAgagagagtcatatcaatacaggagagggagtcatatcaatacaggagaaagattcatatcaatacaggagagtcatatcaatacaggagaagattcatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggaggagGATTCATATCAATataggagaaagagtcatatcaatacaggaggaagatttatatcaatacaggaggaagATTCATATCAACACaggagagtcatatcaatacaggagaaagatttatatcaatacaggagaaagagtcatatcaatacaggaggaagattcatatcaatacaggagagtcatatcaataaagtaatagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatgtcaatacaggagaaagagtcatatcaatacaggggaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtaatgtcaatacaggagaaagagtcatatcaatacaggggaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatacaggagaaagagtcatatcagtACAGGagaagagtcatatcaatagagGAGAAAgtgtcatatcaatacaggagaaagattaATATCAATACAGTAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739888 lncRNA upstream 1902 14909491 ~ 14909694 (+) True G1519759
TU1739852 lncRNA upstream 14451 14893452 ~ 14897145 (+) True G1519750
TU1739837 lncRNA upstream 79238 14832159 ~ 14832358 (+) True G1519738
TU1739729 lncRNA upstream 235891 14672239 ~ 14675705 (+) True G1519654
TU1739661 lncRNA upstream 354473 14556326 ~ 14557123 (+) True LOC110495481
TU1739895 lncRNA downstream 9310 14930827 ~ 14931038 (+) True G1519766
TU1739899 lncRNA downstream 20378 14941895 ~ 14942120 (+) True G1519770
TU1739901 lncRNA downstream 23001 14944518 ~ 14945290 (+) True G1519772
TU1739902 lncRNA downstream 25522 14947039 ~ 14947515 (+) True G1519773
TU1739905 lncRNA downstream 36562 14958079 ~ 14958503 (+) True G1519776
XM_036951026.1 mRNA upstream 10242 14898154 ~ 14901354 (+) False il8r
NM_001124279.1 mRNA upstream 10243 14898448 ~ 14901353 (+) False il8r
XM_036951920.1 mRNA upstream 30729 14877692 ~ 14880867 (+) True LOC118936566
XM_036951919.1 mRNA upstream 49752 14858722 ~ 14861844 (+) True LOC118941101
XM_021570722.2 mRNA upstream 68711 14835394 ~ 14842885 (+) True LOC110495453
XM_036951927.1 mRNA downstream 22583 14944100 ~ 15133334 (+) False LOC110495438
XM_036951923.1 mRNA downstream 53479 14974996 ~ 15133334 (+) False LOC110495438
XM_036951924.1 mRNA downstream 83719 15005236 ~ 15133334 (+) False LOC110495438
XM_036951930.1 mRNA downstream 122464 15043981 ~ 15133334 (+) False LOC110495438
XM_036951929.1 mRNA downstream 151959 15073476 ~ 15133334 (+) True LOC110495438
TU1739843 other upstream 11424 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 96710 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 354250 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 412459 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 475476 14434762 ~ 14436120 (+) True G1519096
TU1740022 other downstream 287452 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 834976 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 874835 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 997640 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 1016713 15938230 ~ 15938818 (+) False G1520748

Expression Profile