RNA id: TU1740049


Basic Information

Item Value
RNA id TU1740049
length 222
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1519892
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15174631 ~ 15174852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaatgaggtggaaactgagctgcacttcctaacctcctgcccaatgtatgaccatattagagagacatatttccctcagattacacagatccacaaagaatttgaaaacaaataaaattttgataaactcccatatctactgggtgaaattccacagtgtgccatcacagcagcaagatttgtgacctgttgccacaagaaaagagcaaccagtgaagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740045 lncRNA upstream 2443 15171956 ~ 15172188 (+) True G1519889
TU1740044 lncRNA upstream 3045 15171362 ~ 15171586 (+) True G1519888
TU1740034 lncRNA upstream 20084 15154310 ~ 15154547 (+) True G1519878
TU1740012 lncRNA upstream 26450 15147790 ~ 15148181 (+) True G1519863
TU1740008 lncRNA upstream 34398 15140010 ~ 15140233 (+) True G1519859
TU1740027 lncRNA downstream 11979 15186831 ~ 15191130 (+) True G1519873
TU1740061 lncRNA downstream 49112 15223964 ~ 15224303 (+) True G1519904
TU1740073 lncRNA downstream 74183 15249035 ~ 15249599 (+) True G1519915
TU1740074 lncRNA downstream 74805 15249657 ~ 15249945 (+) True G1519916
TU1740075 lncRNA downstream 75233 15250085 ~ 15250659 (+) True G1519917
XM_036951927.1 mRNA upstream 41297 14944100 ~ 15133334 (+) False LOC110495438
XM_021570672.2 mRNA downstream 1549 15176401 ~ 15186345 (+) True LOC110495435
XM_036951943.1 mRNA downstream 32503 15207355 ~ 15251952 (+) False LOC110495440
XM_036951946.1 mRNA downstream 32505 15207357 ~ 15251952 (+) False LOC110495440
XM_036951944.1 mRNA downstream 32506 15207358 ~ 15251952 (+) False LOC110495440
XM_036951945.1 mRNA downstream 32506 15207358 ~ 15251952 (+) False LOC110495440
TU1739843 other upstream 274459 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 359745 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 617285 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 675494 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 738511 14434762 ~ 14436120 (+) True G1519096
TU1740022 other downstream 34117 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 581641 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 621500 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 744305 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 763378 15938230 ~ 15938818 (+) False G1520748

Expression Profile