RNA id: TCONS_00048232


Basic Information

Item Value
RNA id TCONS_00048232
length 501
lncRNA type antisense
GC content 0.36
exon number 3
gene id XLOC_024395
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2672491 ~ 2685982 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTGATTTcacttttttgtacattaaatcactttggttggcagttttgttgtttgtgtctttTACTTTCGTCCATCACTTGTAAAAGTACCACACCTTTAAAACGTTATTACTTTTACCCAAGACTAACATCCAAGAGTCAAAGAGGTTGTAACAATGTGTATTGAGACCTACTCCACAGCGCTCTTGTAGACGTCGATGGCTTTCTCTGTGTCCCCCTGCAACACGGAGAGAACAGAAACCCAGCTGAAGACGTGTGAAAACAAGATAAGACGGTTCAATAAAGTCTCATAATCCTTGCGGATATAATGCAGATGTATGAGCCAGTTTCTTTTCTCCAGGATGGGAAGCTCAGGAGCTGCagataaaatatatactttaaaaatattatatactttatatagtaGATCTATATATGAACATATAACAATGTAGAGTGATGCACAACAGAGTCtcctaaatcatatttgaagtcTTTATGAACATTGTAAATGATCCTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156354

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048230 lncRNA downstream 33674 2576247 ~ 2638817 (-) False XLOC_024394
TCONS_00048231 lncRNA downstream 33674 2582285 ~ 2638817 (-) True XLOC_024394
TCONS_00048229 lncRNA downstream 89969 2569671 ~ 2582522 (-) False XLOC_024394
TCONS_00048227 lncRNA downstream 96004 2546343 ~ 2576487 (-) False XLOC_024394
TCONS_00048226 lncRNA downstream 96004 2546343 ~ 2576487 (-) False XLOC_024394
TCONS_00048238 lncRNA upstream 330596 3016578 ~ 3025127 (-) False XLOC_024397
TCONS_00049317 lncRNA upstream 330596 3016578 ~ 3027087 (-) False XLOC_024397
TCONS_00048239 lncRNA upstream 333220 3019202 ~ 3027087 (-) True XLOC_024397
TCONS_00048241 lncRNA upstream 367307 3053289 ~ 3058722 (-) True XLOC_024398
TCONS_00048247 lncRNA upstream 503485 3189467 ~ 3192397 (-) True XLOC_024401
TCONS_00048224 mRNA downstream 317384 2333258 ~ 2355107 (-) True XLOC_024392
TCONS_00048218 mRNA downstream 591120 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048219 mRNA downstream 591120 2003183 ~ 2081371 (-) True XLOC_024387
TCONS_00048216 mRNA downstream 951755 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048215 mRNA downstream 1030096 1635210 ~ 1642395 (-) True XLOC_024383
TCONS_00048233 mRNA upstream 20740 2706722 ~ 2723902 (-) False XLOC_024396
TCONS_00048234 mRNA upstream 20744 2706726 ~ 2723682 (-) False XLOC_024396
TCONS_00048235 mRNA upstream 22232 2708214 ~ 2724033 (-) True XLOC_024396
TCONS_00048236 mRNA upstream 329694 3015676 ~ 3034668 (-) False XLOC_024397
TCONS_00048240 mRNA upstream 361147 3047129 ~ 3058687 (-) False XLOC_024398
TCONS_00048212 other downstream 1042742 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 2181706 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048237 other upstream 330188 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 1639634 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 2204785 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 2654980 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 3242189 5928171 ~ 5928286 (-) True XLOC_024444