RNA id: TCONS_00048234


Basic Information

Item Value
RNA id TCONS_00048234
length 2772
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_024396
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2706722 ~ 2724033 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAACTtctccacatacacacactctctgcaAATATCATCCTTCAGgtcctctgtgtgtgtgtgagtgtgtaagagTGCGTGTCGGTCATGTGGAGGAAGGCTGTGCTGGTGGCGGTGTTGGCGCTGGGGATGGGTTATCTCTACCACACTGACCCAGAGCTGCCGGCCCGCATGCTCAGCTACGTCAGCCAATCACTGCCACCGATGGAGGCTGGTGGAGGATCAGAACCCCGCCCACCCACACTGGAGGAGGCCATCGCTCGCGCCTGGCAGACCCTCATCACGGCTCCGGCCCGCCGCTGGGGGAGAGTTGCAGTGGGGGTGAACGCCTGTGTGGATGTGGTGGTGTCCGGCGTGGGGCTGCTGCAGGCGCTCGCTCTAGAACCAGGCTCCGGCAGAGACCACGAGGTGCTACACAGCAAAGAGGACCTGAAGGAGGCCTTCATCCACTACATGGGGAAGGGCGCAGCAGCAGAGCGTTTCTTCTCAGATAAGGAGGTTTTCCAGAGGATCGCACGAGCCGCTGCAGAGTATCCCGGCGCTCAGctttatgTGGGCGGAAAcgctgctctgattggccagaagCTGGCATCTAACCCACAACTAGTGGTCCTATTGTGTGGTCCGGTGGGGCCGAAGCTTCACGAGATGCTGGATGAACAGATCGTGGTGCCGCCAGAATCTCTGCAGGAAACGGATGAGTACCACCTGATCCTGGAGTACAAGTCAGGTGAACAGTGGGGTCCTTCACGAGCTCCTCAGGCGAATCGCTTCATTCTCTCCCACGATGTCTCCAATGGGGAAATGAGCGCGCTGGAGATGTTCGTGGCCAGTCTGGAGGAGTTCCAGCCGGATCTGGTGGTTCTATCCGGACTGCATATGATGGAAGGAATGGGCCGGGAACTCTGGGAGGAACGACTCAAAGAGGCTGTGGTGGCCATCTCAGACGTGAGGAACGAGGTGCCCATCCACCTGGAGCTGGCCAGTATGACGGACAGAGACTACATGAACCGAATCCTGCAGGAGCAGGTCATGCCCATCGTGAACTCCATCGGTCTGAACGAGCAGGAGCTTTTATTCCTGACCCAATCAGGAGGAGGCCCTCACTCCGACCTCACTTCATGGGACGGCGTACCAGACGTGGGCCGAGTCACAGACATCCTCCTCTGGGTCCTAGAGCAACACGGCCGGGCGGACGCACAATCAGAAGCCGACCTCACCCGCATCCACTTCCACACACTAGCATACCACATCCTGGCTACGGTGGACGGGCACTGGGGGAACCAGGCGGCGGCGGTGGCAGCGGGCGCGCGTGTGGCTAGCAGTCAAGCGTGCGGTTTGCAAACCATCGATATCTCAAAAGTGCTTCTTAAGGCACCGTTAAACTTCCACAGCTCCTTCTCGGAGCCGAGAGAGAGTCTAAAAGTGGAGCCGTCCCGACCGGTGACCGTGTGGCGGAGAGGAAACGTTTCTTTCCATCTCACACCCGTGCTGGTCTGCAAACAGCCGCTGAGGACTGTGGGATTGGGCGACGCTATTTCAGCCGAGGGACTCGTGTTTTCAGAGCTCACGTCTGAGGTTTAGAGACACGCCGgtcttattttatctttttttttttttactctaatgatgggaagagagagagagagagagagagagaggatgttTGTTGTGGAGATGGAGTGTGCACTGTTATTCTCTATTTggagattattattgtttttcctcTGAGATTATATTGAGAAACTCTGCACTGAATGACATGAGCCAGCCTCCGCTAttagttttatgtttattattattattaatattggtcacactttattttgatgaatttaaggtacactgcatctacatgctaacttttctcattggattataagtagactgttagtgtTCGTGAAAGTTGACGTACTcgcagtttcttatagtcagttaaatgtctgttgaaggagcagatattaagcagacagtctactaatactcaattggaccatcaaaataaagtgttaccatattattTACCACAAATCAAACTCTGTCATTATACACTCCATTTGtttattgcagtttttattttggtaatttcTTTTACTATAAGGTTGTATTTGTTAATTGATTTACTAACGATgactaatacatttattacactcacagaaatcagtccaaggcactcgtaaagtgtggaaaatttaaaaatgtaatattcacatggctaaatcttaAAAAACCTACGCGTTTCAGCAGGGATCTGCCTTCATCACGTTAACAACGGTCAGGTGCTTCTagtgcagggatcaccaaacttggttctcgagggccggtgtcctggatattttagttccaacctcaattaaacacacctgaaccagctaatcaagctcttccctactgaaaaaaacagcttaaacaagccttttTTGGGcaggactcgaaccaatgaccttcttgctaaccactgagccgccccattattagttcatgttagtaaatacattacctaAAGCAACCTTATAGTAATGTGTGACCCATTTTAGTTATGACAGGAGCTCATGCTCTGGTTAGCAGGTGCAGAAAACCAGCGCAGTCTTAAACACCTTGAATTTCCATCGAACACTCCTTTTTTTGGGTATGTGAATGTTAATAATTAGCAGAACTTTTTCCAGcagtgatttttgtttttatctgtgtCAAGTAATAAGATCTCTTACACTTATGAAATTAAGTAGTAATAATTAAGAGTAGTTCActcaaataaaaagaaacatcC

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

ZFIN:

id description
ZDB-GENE-061103-421 Predicted to enable ADP-specific glucokinase activity. Predicted to be involved in glucose metabolic process. Predicted to act upstream of or within glycolytic process. Predicted to be active in endoplasmic reticulum. Is expressed in brain; heart; liver; muscle; and notochord. Orthologous to human ADPGK (ADP dependent glucokinase).

Ensembl:

ensembl_id ENSDART00000113382

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048232 lncRNA downstream 20744 2672491 ~ 2685982 (-) False XLOC_024395
TCONS_00049074 lncRNA downstream 20788 2685357 ~ 2685938 (-) True XLOC_024395
TCONS_00048230 lncRNA downstream 67909 2576247 ~ 2638817 (-) False XLOC_024394
TCONS_00048231 lncRNA downstream 67909 2582285 ~ 2638817 (-) True XLOC_024394
TCONS_00048229 lncRNA downstream 124204 2569671 ~ 2582522 (-) False XLOC_024394
TCONS_00048238 lncRNA upstream 292896 3016578 ~ 3025127 (-) False XLOC_024397
TCONS_00049317 lncRNA upstream 292896 3016578 ~ 3027087 (-) False XLOC_024397
TCONS_00048239 lncRNA upstream 295520 3019202 ~ 3027087 (-) True XLOC_024397
TCONS_00048241 lncRNA upstream 329607 3053289 ~ 3058722 (-) True XLOC_024398
TCONS_00048247 lncRNA upstream 465785 3189467 ~ 3192397 (-) True XLOC_024401
TCONS_00048224 mRNA downstream 351619 2333258 ~ 2355107 (-) True XLOC_024392
TCONS_00048218 mRNA downstream 625355 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048219 mRNA downstream 625355 2003183 ~ 2081371 (-) True XLOC_024387
TCONS_00048216 mRNA downstream 985990 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048215 mRNA downstream 1064331 1635210 ~ 1642395 (-) True XLOC_024383
TCONS_00048236 mRNA upstream 291994 3015676 ~ 3034668 (-) False XLOC_024397
TCONS_00048240 mRNA upstream 323447 3047129 ~ 3058687 (-) False XLOC_024398
TCONS_00048242 mRNA upstream 345989 3069671 ~ 3087556 (-) False XLOC_024399
TCONS_00048243 mRNA upstream 346545 3070227 ~ 3079214 (-) True XLOC_024399
TCONS_00048244 mRNA upstream 396128 3119810 ~ 3139805 (-) False XLOC_024400
TCONS_00048212 other downstream 1076977 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 2215941 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048237 other upstream 292488 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 1601934 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 2167085 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 2617280 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 3204489 5928171 ~ 5928286 (-) True XLOC_024444

Expression Profile

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