RNA id: TU1740122


Basic Information

Item Value
RNA id TU1740122
length 292
lncRNA type intronic
GC content 0.29
exon number 2
gene id G1519955
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15360911 ~ 15365587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacaatgctttagatacattttaggttgtttttacaatgctttaggtacattttaggttgtttttacaatgctttagatacattttaggttgtttttacaatgctttaggtacattttaggttgtttttacagtgcttcaggtacattttaggttgtttttacaatgctttaggtacattttaggttgtttttacagtgctttaggcacattttaggttgtttttacaatgctttaggcacattttaggttgtttttcaaatgctttagatacattttaggttgtttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740100 lncRNA upstream 11684 15348946 ~ 15349227 (+) True G1519942
TU1740098 lncRNA upstream 12101 15347408 ~ 15348810 (+) True G1519940
TU1740095 lncRNA upstream 45362 15315337 ~ 15315549 (+) True G1519937
TU1740090 lncRNA upstream 67300 15293310 ~ 15293611 (+) True G1519932
TU1740087 lncRNA upstream 73882 15286808 ~ 15287029 (+) True G1519929
TU1740130 lncRNA downstream 9195 15374782 ~ 15387181 (+) True G1519959
TU1740137 lncRNA downstream 30682 15396269 ~ 15397852 (+) False G1519966
TU1740138 lncRNA downstream 30682 15396269 ~ 15398541 (+) True G1519966
TU1740140 lncRNA downstream 37744 15403331 ~ 15404765 (+) True G1519968
TU1740142 lncRNA downstream 40475 15406062 ~ 15406538 (+) True G1519970
XM_021570717.2 mRNA upstream 16109 15333385 ~ 15344802 (+) True LOC110495449
XM_036951932.1 mRNA upstream 28524 15276578 ~ 15332387 (+) False LOC110496998
XM_036951940.1 mRNA downstream 53474 15419061 ~ 15490199 (+) False LOC110495439
XM_036951941.1 mRNA downstream 53474 15419061 ~ 15490199 (+) False LOC110495439
XM_036951938.1 mRNA downstream 85602 15451189 ~ 15490199 (+) False LOC110495439
XM_036951939.1 mRNA downstream 85602 15451189 ~ 15490199 (+) False LOC110495439
XM_036951942.1 mRNA downstream 85603 15451190 ~ 15490199 (+) True LOC110495439
TU1740022 other upstream 144667 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 460739 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 546025 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 803565 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 861774 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 390906 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 430765 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 553570 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 572643 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 572814 15938401 ~ 15938818 (+) True G1520748

Expression Profile