RNA id: TU1741067


Basic Information

Item Value
RNA id TU1741067
length 3013
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1520738
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15913440 ~ 15916546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGATGACAGCGCAGAAACAGGTGGACCTAAACTACCCTgatgcgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcagaatCACGAAGAGCTAAATCACAACACCTAATTACTCTAGCAGACAtcgtcagtcagacagacatatAAAACCAAGTCACTGTGGCTGGCCCAGATACGAACCCTAACCCAGGGCCGCGTTCACTTACACTTAGTTACATCAGACATGGCATATGGTTGACATGTGACTGACCGGGTATAGAAGCTTGGTCATCCGCTAGATTTATGAgcgtgttagcccactgagctagaGTATTGCTGTTGGGCCTATCACAGAGTTACTAGTCCTCAATGAACCATGATCCAGAAGAGGACGAAGCACAGATGCACGGTATGCATgggtgtgagaatgtgtgtgtgtacgtgactTTGAACTTATCTACATCTGAATCATTTGTCTGACAAATAGATTtccagggacaggagagagagagagagagcgagagagagatagagacagacagaaagagtgagACACATATtgagatagacagagatagagagagcaagcAAGAGGGAGAGGCCAGATCTCTTCATTAGCAGCTTAGAAAATGTAAAGCAGTGTTTTGTGTGTTCTCATAATGCCTCACTATGGGTTACAATGACTCACTGTGCTGTACATTATCTtcctcacacaaacacaaagtGATGTCCGTCTGTTGGGCGACCCTCTTTGTGAGTGCCCTAGTGCCTGTATTGAATAGTGTTGCTGTCCTTGCTGTAATGGTGACCAGATAGAGGAGACAGTGAAGGGGAAGGAAGCAGAGCAGCTGTGTGTGTAAGGAGCCGTTAGGAGACAAGGacgtaatacacacacacacagtcaaaggaCATCTCAGGAAACAGCTCTGTGAAAGtgctctgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtactatgctagtgtgtgagagagaacagaaagatagACAGAGTGAGCCGTCTGTTTTGAATATGGGTTAGCCATTCTGGTTAGCCACAGTCACCTCTCTATGTCACCACCGTCTGTCTACTACTGCTGATACACACAGAACTGCTTTACCCACAGCTTTCCTACCACagagtgttagggctctattacCCACAGCTTTCCTACCACAGCACCACATAGTGTTAGGGCGCTATTAGCCAGAGCTTTTCTACCACAGCACCACagagtgttagggctctattgCCTACAGCTTTACTACCACATCACTACagagtgttagggctctattacCTACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGAGTGATAGGACTCTATTACCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCTACAGCTTTACTACCACAGCACCACAGAGTGTTAGGACTCTATTACCTACAGCTTTACTACCACAGTGCCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattatCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGAGTGTTAGGGCTCTGTTACCCACAGCTTTACTACCACAGCACCACAGAGGGTTAGGGCTCTATTACCTACAGCTTTACTACCACAGCACCACAGAGTGTTAGGACTCTATTACCTACAGCTTTACTACCACAGCACCACAGAGTGTTAGGACTCTATTACCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGCACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACAGTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTACCACagagtgttagggctctattacCCACAGCTTTACTGTAACGTTCGCcgtcttcctctgatgaggagtaagagaggtcggaccaatttgcagcaTGGTATGTGTCAATTTtaataagacaaactgaacactacacaaatacaaaataacaaagtaaaACAAACGAAACGGTCCCGTGTGGTAACAAACACTAACACGGAAATTAATCAACCACAACTctaaagtgaaaccaggctacctaaatatggttctcaatcagggacaacgataaacagctgcctctgattgagaaccataccaggccaaacacagaaatcccaaaacatagaaaaaggaacatagacaacccacccaactcacgccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741066 lncRNA upstream 6473 15902241 ~ 15906967 (+) True G1520737
TU1741031 lncRNA upstream 19772 15886342 ~ 15893668 (+) True G1520704
TU1741032 lncRNA upstream 25889 15887185 ~ 15887551 (+) True G1520705
TU1741017 lncRNA upstream 35022 15876151 ~ 15878418 (+) True G1520697
TU1741009 lncRNA upstream 42774 15869734 ~ 15870666 (+) False G1520691
TU1741068 lncRNA downstream 80 15916626 ~ 15917232 (+) True G1520739
TU1741072 lncRNA downstream 10843 15927389 ~ 15927935 (+) True G1520743
TU1741073 lncRNA downstream 11640 15928186 ~ 15928745 (+) True G1520744
TU1741076 lncRNA downstream 16214 15932760 ~ 15932979 (+) True G1520747
TU1741081 lncRNA downstream 32280 15948826 ~ 15949093 (+) True G1520751
XM_036951947.1 mRNA upstream 48401 15852644 ~ 15865039 (+) True LOC110495649
XR_005037381.1 mRNA upstream 49429 15852644 ~ 15864011 (+) False LOC110495649
XR_005037382.1 mRNA upstream 49429 15852644 ~ 15864011 (+) False LOC110495649
XR_005037380.1 mRNA upstream 49896 15852644 ~ 15863544 (+) False LOC110495649
XM_021570987.2 mRNA upstream 61183 15847371 ~ 15852257 (+) True LOC110495650
XM_021570996.2 mRNA downstream 77067 15993613 ~ 15996859 (+) False LOC110495654
XM_036951997.1 mRNA downstream 93229 16009775 ~ 16021896 (+) False LOC110495655
XM_036951998.1 mRNA downstream 100475 16017021 ~ 16021896 (+) True LOC110495655
XM_036952000.1 mRNA downstream 130599 16047145 ~ 16060945 (+) False LOC110495658
XM_036952002.1 mRNA downstream 130600 16047146 ~ 16060945 (+) False LOC110495658
TU1740959 other upstream 97435 15756493 ~ 15816005 (+) True G1520649
TU1740883 other upstream 113559 15796352 ~ 15799881 (+) True LOC110495644
TU1740022 other upstream 697196 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 1013268 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 1098554 14813982 ~ 14814886 (+) True G1519733
TU1741071 other downstream 2611 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 21684 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 21855 15938401 ~ 15938818 (+) True G1520748
TU1741359 other downstream 548967 16465513 ~ 16468423 (+) True LOC110495674
TU1742927 other downstream 1707270 17623816 ~ 17627644 (+) False LOC110527374

Expression Profile