RNA id: TU1741076


Basic Information

Item Value
RNA id TU1741076
length 220
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1520747
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15932760 ~ 15932979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctttgtctgtatctctccccctATACTCCaatccaacctctctctctctctttgtctgtatctctccccctATACTccactccatcctctctctctctttgtctgtatcTCTCCTCCTATACTccactccatcctctctctctatttgtctgtATCTCTCCTCCTATACTCcactccaacctctctctctctttgtctgtatctctccccctATACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741073 lncRNA upstream 4015 15928186 ~ 15928745 (+) True G1520744
TU1741072 lncRNA upstream 4825 15927389 ~ 15927935 (+) True G1520743
TU1741068 lncRNA upstream 15528 15916626 ~ 15917232 (+) True G1520739
TU1741067 lncRNA upstream 16214 15913440 ~ 15916546 (+) True G1520738
TU1741066 lncRNA upstream 25793 15902241 ~ 15906967 (+) True G1520737
TU1741081 lncRNA downstream 15847 15948826 ~ 15949093 (+) True G1520751
TU1741088 lncRNA downstream 31564 15964543 ~ 15965493 (+) True G1520758
TU1741090 lncRNA downstream 38087 15971066 ~ 15972881 (+) False G1520760
TU1741093 lncRNA downstream 38757 15971736 ~ 15972682 (+) False G1520761
TU1741091 lncRNA downstream 38896 15971875 ~ 15972881 (+) True G1520760
XM_036951947.1 mRNA upstream 67721 15852644 ~ 15865039 (+) True LOC110495649
XR_005037381.1 mRNA upstream 68749 15852644 ~ 15864011 (+) False LOC110495649
XR_005037382.1 mRNA upstream 68749 15852644 ~ 15864011 (+) False LOC110495649
XR_005037380.1 mRNA upstream 69216 15852644 ~ 15863544 (+) False LOC110495649
XM_021570987.2 mRNA upstream 80503 15847371 ~ 15852257 (+) True LOC110495650
XM_021570996.2 mRNA downstream 60634 15993613 ~ 15996859 (+) False LOC110495654
XM_036951997.1 mRNA downstream 76796 16009775 ~ 16021896 (+) False LOC110495655
XM_036951998.1 mRNA downstream 84042 16017021 ~ 16021896 (+) True LOC110495655
XM_036952000.1 mRNA downstream 114166 16047145 ~ 16060945 (+) False LOC110495658
XM_036952002.1 mRNA downstream 114167 16047146 ~ 16060945 (+) False LOC110495658
TU1741071 other upstream 9861 15919157 ~ 15922899 (+) True G1520742
TU1740959 other upstream 116755 15756493 ~ 15816005 (+) True G1520649
TU1740883 other upstream 132879 15796352 ~ 15799881 (+) True LOC110495644
TU1740022 other upstream 716516 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 1032588 14898256 ~ 14900172 (+) True il8r
TU1741077 other downstream 5251 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 5422 15938401 ~ 15938818 (+) True G1520748
TU1741359 other downstream 532534 16465513 ~ 16468423 (+) True LOC110495674
TU1742927 other downstream 1690837 17623816 ~ 17627644 (+) False LOC110527374
TU1743047 other downstream 1833240 17766219 ~ 17766694 (+) True G1522415

Expression Profile