RNA id: TCONS_00048251


Basic Information

Item Value
RNA id TCONS_00048251
length 609
lncRNA type retained_intron
GC content 0.44
exon number 4
gene id XLOC_024403
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 3224085 ~ 3230187 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTGTGTAGCGTGTTGGCTAAAAACAGCAAAAACTTCAGCCGCTTTTCAGGATCTTTATGAAACATCAGGGACACTTATTGACCTTATTGTAGTTTAGAGTTAAAGTACTAGTCGTGGTAAACAAAAATAGGCGGTAATGGGGGGAACCGCGAGTAAACTGCCGAAAGAACTGCTGTCAGAGTATCAGGAGCTCACATTTCTTACAAAGCAAGAAATATTACTGGCACACAAACGATTCTCTGAACTCCAGGGCAGAGAAAACGGGCCGTACAGCTCCAGAGTGTCCATGGAGAAGATCCTCACACTTCCTGAACTCAAGGTGAAAGAAGAccattaaaaatagaaaacaaaaatcttCCAGAATCATAAATACAGCTCCACATGTCTGGTGGTATTGTTTGTAATGTTGTGCGTTTGATCCATCTCAGTCCAACCCGTTCCGGAAGAGGATCTGTCACGTTTTCTCCACCTCTGACTTGCGGGACGGCAGCTTGACTTTTGAAGATTTTCTGGACCTCTTGAGCGCCTTCAGTGATTCTGCAACACTGGAGATCAAGTCCCACTATGCCTTCCGGATCTTTGACTTTGACGATGATGGCACACTGG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04147 Exosome
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050417-170 Predicted to enable calcium ion binding activity. Is expressed in several structures, including Kupffer's vesicle; axis; pronephric duct; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human CIB1 (calcium and integrin binding 1).

Ensembl:

ensembl_id ENSDART00000165007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048247 lncRNA downstream 33947 3189467 ~ 3192397 (-) True XLOC_024401
TCONS_00048241 lncRNA downstream 167622 3053289 ~ 3058722 (-) True XLOC_024398
TCONS_00049317 lncRNA downstream 199257 3016578 ~ 3027087 (-) False XLOC_024397
TCONS_00048239 lncRNA downstream 199257 3019202 ~ 3027087 (-) True XLOC_024397
TCONS_00048238 lncRNA downstream 201217 3016578 ~ 3025127 (-) False XLOC_024397
TCONS_00049318 lncRNA upstream 72378 3302524 ~ 3306305 (-) True XLOC_024405
TCONS_00049319 lncRNA upstream 147677 3377823 ~ 3379551 (-) False XLOC_024407
TCONS_00049320 lncRNA upstream 300321 3530467 ~ 3531168 (-) True XLOC_024410
TCONS_00049321 lncRNA upstream 516018 3746164 ~ 3747949 (-) True XLOC_024415
TCONS_00048271 lncRNA upstream 571088 3801234 ~ 3808477 (-) False XLOC_024417
TCONS_00048248 mRNA downstream 9229 3196855 ~ 3217115 (-) True XLOC_024402
TCONS_00048246 mRNA downstream 33939 3148431 ~ 3192405 (-) False XLOC_024401
TCONS_00048244 mRNA downstream 86539 3119810 ~ 3139805 (-) False XLOC_024400
TCONS_00048245 mRNA downstream 94284 3124860 ~ 3132060 (-) True XLOC_024400
TCONS_00048242 mRNA downstream 138788 3069671 ~ 3087556 (-) False XLOC_024399
TCONS_00048252 mRNA upstream 27786 3257932 ~ 3262318 (-) True XLOC_024404
TCONS_00048253 mRNA upstream 111628 3341774 ~ 3347418 (-) True XLOC_024406
TCONS_00048254 mRNA upstream 147989 3378135 ~ 3393705 (-) True XLOC_024407
TCONS_00048255 mRNA upstream 219813 3449959 ~ 3469576 (-) False XLOC_024408
TCONS_00048256 mRNA upstream 221659 3451805 ~ 3470910 (-) True XLOC_024408
TCONS_00048237 other downstream 191676 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048212 other downstream 1596595 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 2735559 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048288 other upstream 1095470 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 1660621 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 2110816 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 2698025 5928171 ~ 5928286 (-) True XLOC_024444
TCONS_00048310 other upstream 2841449 6071595 ~ 6079431 (-) True XLOC_024448

Expression Profile

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