RNA id: TCONS_00049319


Basic Information

Item Value
RNA id TCONS_00049319
length 634
lncRNA type sense_over
GC content 0.40
exon number 2
gene id XLOC_024407
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 3377823 ~ 3393705 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATAATCACGAATCCTGCATCAAATATCACCAATAATCACAAAGAAAAGACAATTTCTGCATCAAATCACCAAATCACAATTACTGCATCCAATATCACCAATAATCACAAAAATTTCCATCTCAGCATAATATATTATCAATAATCTCAAAGAAAAGACAATTCATGCATCAAAAATGACCAACATTCACAATTACTGCATCCAACATCACCAAAAATCACAAAGAAAAATTTCGTTCATTTCAGAGCAGTCAAATCTGAGGAAGTGTCTGGCGCTGCTGTCAAGGACAAAACGTCCCTCATTTTGCATTCAGCGAAACACAgaagttaaagagcccatattatgggtttttgaaaattcccctccatgtagtgtgtaacacagctctaagtgaagtgaagtatccagctaaggcttaaatctgtaagaatacagtgtttaaaacggttgattcatctataaaagagtcgactcatagtgcttcaaacgagtcgccttgataccgactcattaggtgtttcgccatgacgtacgaacgaaaccaagttattcacgtgcacgcgcaaacccgggagatttcaaacctgaggccccgccctctgacgcagaaacccagacacacacacacccac

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0140096 catalytic activity, acting on a protein molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049318 lncRNA downstream 71518 3302524 ~ 3306305 (-) True XLOC_024405
TCONS_00048251 lncRNA downstream 147677 3226344 ~ 3230146 (-) True XLOC_024403
TCONS_00048247 lncRNA downstream 185426 3189467 ~ 3192397 (-) True XLOC_024401
TCONS_00048241 lncRNA downstream 319101 3053289 ~ 3058722 (-) True XLOC_024398
TCONS_00049317 lncRNA downstream 350736 3016578 ~ 3027087 (-) False XLOC_024397
TCONS_00049320 lncRNA upstream 150916 3530467 ~ 3531168 (-) True XLOC_024410
TCONS_00049321 lncRNA upstream 366613 3746164 ~ 3747949 (-) True XLOC_024415
TCONS_00048271 lncRNA upstream 421683 3801234 ~ 3808477 (-) False XLOC_024417
TCONS_00048274 lncRNA upstream 433753 3813304 ~ 3823203 (-) True XLOC_024418
TCONS_00048277 lncRNA upstream 501171 3880722 ~ 3883216 (-) False XLOC_024421
TCONS_00048253 mRNA downstream 30405 3341774 ~ 3347418 (-) True XLOC_024406
TCONS_00048252 mRNA downstream 115505 3257932 ~ 3262318 (-) True XLOC_024404
TCONS_00048249 mRNA downstream 147636 3224085 ~ 3230187 (-) False XLOC_024403
TCONS_00048250 mRNA downstream 149798 3225954 ~ 3228025 (-) False XLOC_024403
TCONS_00048248 mRNA downstream 160708 3196855 ~ 3217115 (-) True XLOC_024402
TCONS_00048255 mRNA upstream 70408 3449959 ~ 3469576 (-) False XLOC_024408
TCONS_00048256 mRNA upstream 72254 3451805 ~ 3470910 (-) True XLOC_024408
TCONS_00048259 mRNA upstream 95833 3475384 ~ 3503164 (-) False XLOC_024409
TCONS_00048258 mRNA upstream 95833 3475384 ~ 3503164 (-) False XLOC_024409
TCONS_00048257 mRNA upstream 95833 3475384 ~ 3503164 (-) False XLOC_024409
TCONS_00048237 other downstream 343155 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048212 other downstream 1748074 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 2887038 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048288 other upstream 946065 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 1511216 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 1961411 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 2548620 5928171 ~ 5928286 (-) True XLOC_024444
TCONS_00048310 other upstream 2692044 6071595 ~ 6079431 (-) True XLOC_024448

Expression Profile

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