RNA id: TCONS_00048278


Basic Information

Item Value
RNA id TCONS_00048278
length 1975
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_024421
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 3880722 ~ 3884430 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTGACAGACGAATAAAATCACAATTTCAGCATAACAAGTGTGCTGACGCTCTGCGTAGTGTTGGGTGAAAACCGTGAGGCACTTTGTTGATGCTCCGTCAACAATTTACTAAAAACATGCGTCACGTTTGGAGGATGACAATagtacaaattaaaaaaacaaaccgtTCAGTATACAAAAACAACTCCTTAGTCCAAATTCCACTCTTAGTCTATCCAAAGGCAAACTCTCGTGTTTCAAATGTACAGTCAAACGCTGCTCCAGACATTAGAACACATTTTAGCATTAGCCACTAATCGATACACAAGATACCTATGAAACCAGTTGAtgaagggttagttcacgcaaaaatgtaAACGATCAAGTTATTTTCTCACACTAAAAGCATCCCAGGAGCCTACATGACATTATTCATTTAGTCAAATCCAGTCAAGAGTAATATTAAAAATCCTCTTGGGCTTTTCCAGCTCTATAATGGCCAATACTCCAATAAAGTGCATAATCCATTATAAAAAAAGTACCTCACGCAGCTTTGGTAGATGAATAAACGACTTCTTGAGCAAATCCATGTGTTTTTGTTAGAGAGATAtccatatttaaaactttataaacTGTTTTGTGTTTTAACTTCCAGCATAAGTTGCCTTCTTCTGACGCTGAGcgccatctgctggacaggagtcttttttttttatctcttaaGTGTGAAGCTGAACAAGCGCAATGAAAAGAGACAAACAAAGCACACTCTTGTCCAGCTGATGGCGCTTTGTATaccaaaaaatgcatttaaatagtaaattaagacagaagttttttttttttatgaacaaaacCATTTTACGCCATTATCATTGTACTACAGTTGCTCTGTATGAACTACAGATGGCGCTGCACTCAATCATTTCACAGAAGtcatacaaaaatgattattttaggctttaaatatagattttttcaatgcttaatttgtgaattgcgaggtctgATAACAGATCCGGCATGCTACCCGCGGATGGAGAGGTGTCACGCACAAAAGTGGATAGAAAGTGGGGGGGCCACTGACGTTGGATGTTGTTGGAAGGCAGAGGGCTTTCACGGACAaaggaagaaagtgaagagcaggggggggGGGTCTGGTTCGGGTTGTTGCAAATGAAtgtaaagagggttggggagttgcggaagaaagtgaaTAGCGAatgggggaggagggcggttaaggagggggatcggtaaaatgaggtgctggatcagatttcagaggtgccggatccagcgtgttccagcacaaattaagccctggataTTGTTCTTACAAAAATGCGTGGATTTGCAACAGGAGACCTTTATTCAGCCTCCATAGCCACATGGGGCACTTATTTTCATTGATAGATGCATTTATTGGACTTGTTTTGGAAGAAATACACCTGTCTGATGCCATTTCAGAGCTGGAAAAGCCATAGATCATTTTTAATAGAACTTTAATTGAATTCGACTGAATGTAGAAAGTCATGTACACCACTAGTAAGCCTTGAAAGTGAGTAAATCACtagataattttcatttttgagtgaactaaccctctCATGAAGAACAAACTGCAGTACTAATGTAGCTTTACACCTGGTTGGGGCATTAAGATCATTTTTGCTGTGATGAAAACGTGATTGTATACCTTTCATGATCTGCTTTACCTGTCTGTGCTCTTCTTTCCTCTGCTCCTTCCTCTGTTTAATCTGACGAGGCTCTGAACGAGTCCATTTTGAGTTTGGTCTCCTGAAACGCTTGGGAGTTTTGTGGAAAAAATGTGCAATGTTAGCATCCCTTGAGCATCGTTTGGTTTTCTCCAGTCTCTCCTCACTGCCGCGCTCTTGCGAAAGCATCCCGGAGCCACGGAGAATCCTCGTAAAGTCTGGGGTCTCCGAGATATTCGGTTGTGCGTTTGTAGAAGTAGTAATACAACACAGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048274 lncRNA downstream 57519 3813304 ~ 3823203 (-) True XLOC_024418
TCONS_00048271 lncRNA downstream 72245 3801234 ~ 3808477 (-) False XLOC_024417
TCONS_00049321 lncRNA downstream 132773 3746164 ~ 3747949 (-) True XLOC_024415
TCONS_00049320 lncRNA downstream 349554 3530467 ~ 3531168 (-) True XLOC_024410
TCONS_00049319 lncRNA downstream 501171 3377823 ~ 3379551 (-) False XLOC_024407
TCONS_00049323 lncRNA upstream 284616 4168932 ~ 4171757 (-) True XLOC_024425
TCONS_00049324 lncRNA upstream 310476 4194792 ~ 4195343 (-) True XLOC_024427
TCONS_00049325 lncRNA upstream 685912 4570228 ~ 4578442 (-) False XLOC_024432
TCONS_00049326 lncRNA upstream 685912 4570228 ~ 4578464 (-) True XLOC_024432
TCONS_00049327 lncRNA upstream 1046049 4930365 ~ 4931600 (-) True XLOC_024435
TCONS_00048276 mRNA downstream 12732 3844582 ~ 3867990 (-) True XLOC_024420
TCONS_00048275 mRNA downstream 44125 3831136 ~ 3836597 (-) True XLOC_024419
TCONS_00048273 mRNA downstream 50450 3809733 ~ 3830272 (-) False XLOC_024418
TCONS_00048272 mRNA downstream 72080 3801660 ~ 3808642 (-) True XLOC_024417
TCONS_00048270 mRNA downstream 72087 3801227 ~ 3808635 (-) False XLOC_024417
TCONS_00048279 mRNA upstream 2954 3887270 ~ 3892686 (-) True XLOC_024422
TCONS_00048280 mRNA upstream 13591 3897907 ~ 3979583 (-) False XLOC_024423
TCONS_00048281 mRNA upstream 30764 3915080 ~ 3979288 (-) True XLOC_024423
TCONS_00048282 mRNA upstream 249172 4133488 ~ 4146947 (-) False XLOC_024424
TCONS_00048284 mRNA upstream 249173 4133489 ~ 4148719 (-) False XLOC_024424
TCONS_00048237 other downstream 846054 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048212 other downstream 2250973 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 3389937 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048288 other upstream 441300 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 1006451 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 1456646 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 2043855 5928171 ~ 5928286 (-) True XLOC_024444
TCONS_00048310 other upstream 2187279 6071595 ~ 6079431 (-) True XLOC_024448