Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00048310 |
| length | 806 |
| RNA type | processed_transcript |
| GC content | 0.57 |
| exon number | 5 |
| gene id | XLOC_024448 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 6065011 ~ 6082509 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:2000766 | negative regulation of cytoplasmic translation | biological_process |
| GO:0006417 | regulation of translation | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:1990124 | messenger ribonucleoprotein complex | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008135 | translation factor activity, RNA binding | molecular_function |
| GO:0043022 | ribosome binding | molecular_function |
| GO:0000900 | translation repressor activity, mRNA regulatory element binding | molecular_function |
| GO:0045182 | translation regulator activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003730 | mRNA 3'-UTR binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080723-42 | Predicted to enable mRNA 3'-UTR binding activity; ribosome binding activity; and translation regulator activity, nucleic acid binding. Predicted to be involved in negative regulation of cytoplasmic translation. Predicted to act upstream of or within mRNA processing and regulation of translation. Predicted to be part of messenger ribonucleoprotein complex. Predicted to be active in several cellular components, including neuron projection; nucleus; and synapse. Orthologous to human CPEB1 (cytoplasmic polyadenylation element binding protein 1). |
| ensembl_id | ENSDART00000158463 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00048303 | lncRNA | downstream | 168023 | 5883742 ~ 5903572 (-) | False | XLOC_024443 |
| TCONS_00049330 | lncRNA | downstream | 168173 | 5902225 ~ 5903422 (-) | True | XLOC_024443 |
| TCONS_00049329 | lncRNA | downstream | 294338 | 5776031 ~ 5777257 (-) | True | XLOC_024441 |
| TCONS_00049076 | lncRNA | downstream | 604786 | 5466493 ~ 5466809 (-) | True | XLOC_024439 |
| TCONS_00049328 | lncRNA | downstream | 771103 | 5296432 ~ 5300492 (-) | True | XLOC_024437 |
| TCONS_00049331 | lncRNA | upstream | 88695 | 6168126 ~ 6169051 (-) | False | XLOC_024450 |
| TCONS_00049332 | lncRNA | upstream | 88695 | 6168126 ~ 6177023 (-) | True | XLOC_024450 |
| TCONS_00048313 | lncRNA | upstream | 142655 | 6222086 ~ 6222837 (-) | True | XLOC_024451 |
| TCONS_00049333 | lncRNA | upstream | 410911 | 6490342 ~ 6499056 (-) | False | XLOC_024458 |
| TCONS_00049334 | lncRNA | upstream | 410911 | 6490342 ~ 6499642 (-) | True | XLOC_024458 |
| TCONS_00048308 | mRNA | downstream | 22256 | 6016642 ~ 6049339 (-) | True | XLOC_024447 |
| TCONS_00048307 | mRNA | downstream | 60548 | 5992909 ~ 6011047 (-) | True | XLOC_024446 |
| TCONS_00048306 | mRNA | downstream | 60561 | 5992789 ~ 6011034 (-) | False | XLOC_024446 |
| TCONS_00048305 | mRNA | downstream | 108060 | 5935938 ~ 5963535 (-) | True | XLOC_024445 |
| TCONS_00048302 | mRNA | downstream | 255761 | 5790536 ~ 5815834 (-) | True | XLOC_024442 |
| TCONS_00048312 | mRNA | upstream | 132246 | 6211677 ~ 6223567 (-) | False | XLOC_024451 |
| TCONS_00048314 | mRNA | upstream | 149065 | 6228496 ~ 6261693 (-) | True | XLOC_024452 |
| TCONS_00048316 | mRNA | upstream | 201560 | 6280991 ~ 6292270 (-) | False | XLOC_024454 |
| TCONS_00048317 | mRNA | upstream | 203327 | 6282758 ~ 6292560 (-) | True | XLOC_024454 |
| TCONS_00048318 | mRNA | upstream | 270461 | 6349892 ~ 6389713 (-) | False | XLOC_024455 |
| TCONS_00048304 | other | downstream | 143309 | 5928171 ~ 5928286 (-) | True | XLOC_024444 |
| TCONS_00048299 | other | downstream | 730493 | 5340962 ~ 5341102 (-) | True | XLOC_024438 |
| TCONS_00048296 | other | downstream | 1167163 | 4890767 ~ 4904432 (-) | True | XLOC_024434 |
| TCONS_00048288 | other | downstream | 1745864 | 4325616 ~ 4325731 (-) | True | XLOC_024429 |
| TCONS_00048237 | other | downstream | 3036927 | 3016170 ~ 3034668 (-) | False | XLOC_024397 |
| TCONS_00048315 | other | upstream | 197287 | 6276718 ~ 6276855 (-) | True | XLOC_024453 |
| TCONS_00048324 | other | upstream | 362775 | 6442206 ~ 6447761 (-) | True | XLOC_024457 |
| TCONS_00048327 | other | upstream | 762777 | 6842208 ~ 6842323 (-) | True | XLOC_024461 |
| TCONS_00048361 | other | upstream | 2025595 | 8105026 ~ 8128670 (-) | True | XLOC_024481 |
| TCONS_00048365 | other | upstream | 2245307 | 8324738 ~ 8324855 (-) | True | XLOC_024485 |
