RNA id: TU1770257


Basic Information

Item Value
RNA id TU1770257
length 203
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1547041
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39268616 ~ 39268818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTAGCCGATTCCCAGTTCGTCCACTAGATAGCAATAGGAGATCACATGTCTCTTGGCCACTTATTTCTCAGCATGGGGGTTTCTTATGACAGTAGTAGGATTTGATATCGATTTCCCAAAAAACAATGCCTGTAGCTTTCAAATAATATGTAAATTTATATTTTCAAAACAACCGCTCAGAGTTTGACTTGTTAATCGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770255 lncRNA downstream 4362 39263873 ~ 39264254 (-) True G1547039
TU1770254 lncRNA downstream 5437 39262921 ~ 39263179 (-) True G1547038
TU1770163 lncRNA downstream 30571 39237654 ~ 39238045 (-) True LOC110496197
TU1770144 lncRNA downstream 35536 39232559 ~ 39233080 (-) True G1546933
TU1770143 lncRNA downstream 36421 39231690 ~ 39232195 (-) True G1546932
TU1770270 lncRNA upstream 105758 39374576 ~ 39384675 (-) False G1547052
TU1770271 lncRNA upstream 105758 39374576 ~ 39382376 (-) True G1547052
TU1770322 lncRNA upstream 145107 39413925 ~ 39414131 (-) True G1547103
TU1770323 lncRNA upstream 145355 39414173 ~ 39414433 (-) True G1547104
TU1770326 lncRNA upstream 147732 39416550 ~ 39416805 (-) True G1547107
XM_021571958.2 mRNA downstream 6160 39247198 ~ 39262456 (-) True LOC110496198
XM_036952730.1 mRNA downstream 7243 39247198 ~ 39261373 (-) False LOC110496198
XM_021571957.2 mRNA downstream 23561 39237986 ~ 39245055 (-) False LOC110496197
XM_021571955.2 mRNA downstream 23562 39233121 ~ 39245054 (-) False LOC110496197
XM_021571941.2 mRNA downstream 122021 39116591 ~ 39146595 (-) True LOC110496190
XM_036952732.1 mRNA upstream 766 39269584 ~ 39295940 (-) False LOC110496200
XM_036952733.1 mRNA upstream 766 39269584 ~ 39295940 (-) False LOC110496200
XM_036952734.1 mRNA upstream 766 39269584 ~ 39295940 (-) False LOC110496200
XM_036952735.1 mRNA upstream 766 39269584 ~ 39295940 (-) False LOC110496200
XM_036952736.1 mRNA upstream 766 39269584 ~ 39295940 (-) False LOC110496200
TU1769526 other downstream 480815 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 494932 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 592587 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 705298 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 1054567 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 356957 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 374037 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 374037 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 415969 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 1117152 40385970 ~ 40391883 (-) True G1548367

Expression Profile