RNA id: TU1780640


Basic Information

Item Value
RNA id TU1780640
length 1500
lncRNA type antisense_over
GC content 0.43
exon number 5
gene id G1556356
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 48076787 ~ 48140642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCGTTAAACAATTTTATTTTTTAGTACAACAGTTAAGTCAACTAGTAACATCTATTAAGAATCCAAAGTGTGTTCCTCTTTTGCATTCCATGTGTAGACCCACTTCCAGTAACATCCTAGATGATTCAAAAGTCTGGCAAAGTTACTTCATTGCCCTACAAAAGCACTAAGTCATGTGCTTTGAGACAAAACTCCACTTTACAAATGCATAAAATCTGCAGTGGCACAAAGATTAGATTTAgggtgtctgaaatggcaccctattccatatagtgcactacttttgggtaGTGTAATAGGATCAGGATGCCATATCAGCCCTAGCTCTTTAAAGAACAAGACTAGCAGATCTCTGAACAGCAAAAGCTGCACTACGACACCTGATGCTGTGAAAAAAGGTGAAACCAATCAATATGTTAACAAACAGTGATCAATAAGTGCTATGAACAGTCAGGTGTGAGATACACGGGGACACTGTTCCAAGGCGGCACTATGGAATAGAGAGATCATGTCGAGGGCCTATGCACAGCACATGCTTCCTTAAAGGACAACTACATACACTGCTATTTTTCATTAGGTCAGAAGCTGCAATGACAAAAGCTACATATCCAAATAAATGGGCTGTGTATGAAACAGTTACTAGAGGTCAAATCCTTGCTTCCTCTTTTCATTAATCTCTCAAAGCGTCATTGGGGGTATAAGGATATTACCTTGGATCCTATCCTCCAATGCCATTTGAAAGGAATTGAGGATTTGAAGGCTAGTAACATTTAGACAGCCGTGGAATAGAAGCAACAAGGAGACTAATATCCACATGTAAAACTATAGCAAGTACACTTATAGCAAAGAAGCTAAATTCACAAACGGGGAGAACTTAATTTCCTTCATAAAGTGGGTGGCAGTGAACAAAAATACTGGCCATCAACTAAATATAAATCAATCTTTGGATACGTAAAAAACCCTATAGTATACAATTCCCCCATAGACTGAACTTTTCAGTTTTCTGATGTCTCGGCACCGCCCTCTTTGGTTTCCTTCTTAGCACGCACCTCTTCCAGTTTCTTGTCCTTCTCCTTGAACTTCTCACTCATGGCTGCCTGAAGGGCCTCCTTGTTTTCTTTGTTAGCCTCCATCTTCTGGTTAAGCTTCTCCTCCGCTATCTTGCTGAAGTTGTTGTTCTCCTCCATGGCTTTCCTTTGCACCTCCTTCTCATGCTCCCGCTTCTCAGCGAGGTGTTTCAGAACCTCCGCTTCATGGGACTTCCTCTGGATCTCCTCCAGGGACAGGTCCTTCTTCttggggggagaaagggggaactCTCCCTTGGCGTCTGGAGCTGGAGCTCCTAGGATCACCTCGAACGCCTGGCCAGACGCACGTTTGTCAATCTCCTTAACCAGAATATCTCCGCAGGAAGAGGCCATTTCAGCAGTGGACAGAGTCAATGTACCTTCACAAACAGTGAAACCAACTCCTCCTCAGCAGCCAGACTTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1780607 lncRNA downstream 53194 48018766 ~ 48079170 (-) True G1556331
TU1780599 lncRNA downstream 124264 48007900 ~ 48008100 (-) True G1556323
TU1780595 lncRNA downstream 127465 48004669 ~ 48004899 (-) True G1556319
TU1780594 lncRNA downstream 128867 48003178 ~ 48003497 (-) True G1556318
TU1780587 lncRNA downstream 141161 47990953 ~ 47991203 (-) True G1556311
TU1780844 lncRNA upstream 197194 48337836 ~ 48338051 (-) True G1556545
TU1780851 lncRNA upstream 200095 48340737 ~ 48340986 (-) True G1556552
TU1780863 lncRNA upstream 206267 48346909 ~ 48347205 (-) True G1556564
TU1780875 lncRNA upstream 215045 48355687 ~ 48356091 (-) True G1556576
TU1780886 lncRNA upstream 223234 48363876 ~ 48364078 (-) True G1556587
XM_036952968.1 mRNA downstream 70202 48057022 ~ 48062162 (-) True LOC118941177
LOC110496403 mRNA downstream 82644 48037858 ~ 48049720 (-) True LOC110496403
XM_021572279.2 mRNA downstream 110254 48001886 ~ 48022110 (-) True LOC110496402
XM_021572278.2 mRNA downstream 145804 47982726 ~ 47986560 (-) False LOC110496401
XM_036951068.1 mRNA downstream 205349 47890580 ~ 47927015 (-) False LOC110496837
XM_036952975.1 mRNA upstream 251273 48391915 ~ 48661346 (-) False LOC110496838
XM_036952977.1 mRNA upstream 251273 48391915 ~ 48661346 (-) False LOC110496838
XM_036952978.1 mRNA upstream 251273 48391915 ~ 48661346 (-) False LOC110496838
XM_036952971.1 mRNA upstream 251273 48391915 ~ 48661347 (-) False LOC110496838
XM_036952972.1 mRNA upstream 251273 48391915 ~ 48661347 (-) False LOC110496838
TU1780583 other downstream 148755 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 186790 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 585793 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 1219449 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 2024262 46101248 ~ 46108102 (-) True G1554091
TU1780876 other upstream 215971 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 1827254 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 1882449 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 2215627 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 2296355 50436997 ~ 50437459 (-) True G1558916

Expression Profile