RNA id: XM_021573706.2


Basic Information

Item Value
RNA id XM_021573706.2
length 5845
RNA type mRNA
GC content 0.48
exon number 6
gene id ston2
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 25825790 ~ 25876073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaagagaggggggcagagattTGAGGTAAATATTCCTGAAGAAAGGTACGAGAGAGAGGACCCGAACAAAGtaaacagagaaagagggagaagtagGCAGGCTCCTACCCGCTCCTACATGCCCCTGTTGAACTATGCAGGGTGGCTGCTGAGTCACATGACCTGACCTACAGCCAGCACTATGGAACAGCAGGGAACTCCTCTCCCTAGTCAGCCTTTCATCCAGCTCACGCGCACACACCCGACAGACCACACACTCCTTTACTGTGATACTACTTGATTTGTCAGTGTTCCAAGAGGATGAAGGTATAGAGATGGATTCAGTCAGCTGGACTTCCAACACCAAACTCCCCGGCACCCAATCAGAGACCCCCGTTTCCTCTGGACGCTTCTCCTCCTGGGTGACCTTCGACGATGACGAGGAGGACAAGCCCCACCACCTGGAGCAGCCATCCCACACACGATTGGATGATCTCAGCCACTTCCAGGATGCCAAAAGTAACCTGATTGGTTCTCCTCCCAACGTTTGGAAGCAGAACGGGAACCAGCAGAACCAGAACCGCCACCTCCTAGACCTGACGCCAGACGGAAACCCTCCTAGATCCCTTCTGATTGAACCTAGAACCGCTCCCCTGCTCCCCGGTAGGACTAAACCTTACACCAAGAAGAACCCTTTCCTGTGTGAAGAGTTCAATGACATCCAGCCCTCTCCCATTAACCCCTTTAGTTCCTACTTTGACTGTAAACAGGAAGTGGCATCAGAGACGATCCAGAGTAATGGCTCCGCCCACCACCTGGAGAGCTCTCCCTGTGCCTTCTCCTTTAGCTCTCCTTTCTTCCAGTCTTTCAGCTCCCACAGCCAAGAGGCCAAACGAGAGTCCATTCTCGTCTTCTCCTCCGAGTTTGAGCCCaccagaggaggaggggaagagacagTCAGCCATGTCACTCCTCCCTTAGACAGACTAGACCTGGATCAGCTGAGAAACCTCCAGATCACAGACCCAGACGATCCAGGCAGCCCTACTTTGCCTGATGACTCAGTGGAGGATGCGGAGGAGGCAAAGGAAGATGGGTTgcagggagaggatgagggcaCCCCCTACCTCCCAGATCACATGACCCCCCAAGATGGCTGGGCCATGCTGCTCCGTataccagagaagaagaacatcatGTCGTCACGCCACTGGGGGCCTATCTATGTCCGTCTGTCTGACGACGGCGTGCTCCAGATGTTCTACGAGAGAGGTCTGGAAAAACCCTTCAGGACCCTGAAACTGGACCCTCGCTACGAGGCGGCTGAGCACCGCCTGCAGAATTACGAAGAAGCCGGCCGCGTCCACACGCTCAGTGTGGACCTTGTCCAATACCGCGAGAGGAGGCGAATCCAGCCGAAGTCACCCGTCACCCACCAGCCAATCCGTGAGCAGCTGGTGAAGCTGGGCACCACCTGTTACCAAGACTTCCTGAGTTTTCGTCATGCGCTGGTGGAGGTGCTGAGGCGGTTGCCGGCAGTGACGGGTGGGGCGTTGACGGGGTCGCCCATAGGGGCGGGGCTGACAGAGGAGGAGGTTCAGGTGGAGGTGAGGGACGAGTTCTACGGGACGGTTGCTGCGGGAGATGGGAGGATTCTGAAGCAGCTTGTGATGACTCGTGTGCACGTGCTGGCCTTCCTCTCTGGGTCGGCAGGCTGCCGCCTCGGACTCAATGATGTGCAGGTCAAAGGTAAGGAGGTGGTCTCCAGACACGACATCatccccaacaccaccacccgcTGGATCCGCTTACGTGACTGCGAGCTTCATGACTTACACGCAGACGAACTAGAGTTCCTGTCGTCACGCCAAGTTGTCTTCACACCGCCACCCTGCCGCCGCTTCCAGCTGCTCGCCTTCCGCACGGCCTTCGCTGAGAAAACCCTCCCCTTCACGCTGCGCACTGTTGCCTCCGTCCGAGGCGCCGAGGTCACCCTGCAGTCCTGGCTGCTGATGTCACAGGGGTTCTCGTCCAATCGGGACACGTTGAACCTCATCCCCTGCGAGAATGTGGCGATCCGCTACCCCATCCCTGAGATTTGGGCCAAGAACTTCCGTCGGGACGGGGTGATGGGGGAGAGGTCACTGAAGGCGAGGTTCAACAAGGGTGCCAGCTTCGGCACGGCGAGTACTTCCGGGTCAGAGCCAGTGATGAGGGTGACCCTTGGCACGGCCAAGTATGAGCAGGCTTTTAAAGCTGTGGTGTGGAGGCTCAGCCGCCTGCCTGACAAAAACTCTGCGTTGGGTCACCCCCACACCTTCTTCTGTCGTCTGGAGCTGGGTTCGGACCGGGAGGTGCCAGCTTCGCTGCAGAGCCACCTGGAGGTCGAGTTTGACATGCCCGCCGCCTCTGCCTCCAAAGCCACCGTCCGCTCCCTCTCTGTAGAGGACAGGGCAGACGCCAAGAAGTGGATCAACTACAAATCACACTACTCCTACCAGGTGCCTATAGAACAGAAGACAGGCGGCCTCTCAGAGAGCAGCAGCCCTACACTGGACCAGGACCAGCCTGGAGAATGTGCACagcagtgaacacacacacagacagacggatgTAGGGAGGGCGGGAGGATTTGATGACTGCTTTTTTCACAGGAGAAGGGAGAAAAGTCACTTTTTGCACTTTGAAGAACTGTACCGGAGGACTAGTTGGCTGATGTTTGTGCATAGATTGGATGTAGACTGAATGTACACTGGACATAACTGATTCTCGATAGGACATCAACTTGACATAGAATGGGTCTAGTGGTCGTAGACTGGACATAGACTAGATCTACACTAGACCAACTGGTTATAGACGGGTCGTGGACTGGTATGACTAGATGTACTGCCAATGGAcaatttattaggtacaccatccCATTCACAAACatggatcgctcctacagacagtgagtcacgtggccatggcttgctatataaagcaggcattcagttactgttcagttgattgttagaatgggcaaaacaagtgacctaagcaactttgagtGTATTATGATCGACGGTGCCAGGCACGCCGGTTCCAGTTTCTCAGAAACGTccagcctcctgggcttttcacgcacaacagtatctagggtttacagagaatggggcgacaaacaaaaaacatccagtcagcagcagtcctgtggacaaaaacagcttgttgatcaAAGAGTTTGAAGGAATCAGCAAGAATTGTGCAAgttaacaggcgggccacaatgaggcaaataacggcgcagtacaacagcggtgagcagaacggcatctcggaacgcacaactcgtcagtccttgtcatggatgggctattgcagcagacgaccacgccgggttccactcctatcagctaaaaacaagaggaatccgctccagtgggcacgcaatcaccaacactggacaattgaggagtggaaaatcATTTCCTGGAACATGATAGTgagttcagtttacttgagtggGCCTAGAgtcagtccccagacctcaacccaatagagcatctttgggatgagatggaacggaCTGTTCACAGCATGAATATACCGccatccaatctgcagcaactgcgtgaTGCCATCGCGTCcacatggaccaacatccctgtggaatgtttccGAGACCTTGTAGAATTCcccaaataattcaggctgttctggaggcaaaggggggtccgacccggtactatatgggtgtacctaataaactggtcgGTGAGTGTAGATTCTGCTTTGTTGTAGACTAGATATAAACTGGACTAAACTGGTTGTAGAATGGATATGACTAGATGTAAACTGGATATACTCTACTTAAACTAGTCGTAGACTGGATATGACTAGATGTAAACTGGATATAGACTGGACTTAGACTAGTTGTAGATTAGGGAAACTCATTAGACtggaggctagttaaggatcttgctttgttcatttgtttattttcttAAAAATGCTGATTTGGGAAGACTAGTCTTACTGAGGTATTAGTTTTATATGATGATTCATTTATTGTGAGTGGATCGGCTTGGCCTTGTGGTCTTACCCCGTTGGGGTACAGCAAGGGCAACGTTACAGATcgttcagatagaaatgcatTGCGCAGAACAGATGATTGTCTGTGAGAGTCAAATATTGCGGTATGATGGGGATTAGTCTGACATTGTAAAGCCTGGCATTTCAGTAAACCAGGACATTGAGATAAGTGAAATAAGTGCCAGGAGTACAGTCATTACAGTCTTAGTGGATTTCATGCACTCTTGAGGCTAATCGAAGCACTAGCTAATGTGCTTCTACAGTACGTGTTTGCTTCAGTGTTCATTGACCTTCCACACAATTCTCAATCAATAGATTTAAGAGGCTTACATTAGTTTACATAGTAGAGACAAAATGGCTCTTCAATATGCCCCCCCCCCGTGTCAGTGTTGGTTCAGTATTCGACTGAATGCTCTTCAGTATTCGACTGAATGCTCTTGTGTTCAGTCAGGTGTTAGGTAAGCATAAATGCTTTCTGCTTTTTCTCTCTCGCAAAGTTGAAGGTTCTTCCAAAAGGTCTTACAGGTACTTCGGTCCTGTCATTTCACATAGTCGTCTTAACCAATCTTTCCGTGAGTTAACAACAGTCAATACTGCaattggtgatgatgatgatgcagaGTTCTAATACGCTAATGACAACATACTGTAGTTTGGCTATTTTGGCTGTACTTGGAAACTgcagcatttttatttttttgaaatacattttttgtttttataaatgtgcttTACATGTACAATGTGCATCCATCCGTATTACTAACATTGACTCAATGTGAacaagatactgtatgtacaaaaCACAACTATTCTGCAATGGACATCATCTGCAGGTCTAAACACTGATGTCCATTTTTTTCTAGCTGCTCCGTTGTGTAGTTGGTCACAATTGTAGGTCACTGTTGTCGTTCAGTTGGTACATTTTGTGCAAAAAAATGCTTCTTTCTGAAAATGGCCCTTACTTGAAGCATCTCAAAACGTCCCTTAGAGGGAATTTTGTTCTCGAACAGCACAATAAATCAAACTCAACAAATGTACTGATAAGGGGGggggtggttgttgttgtttaggaCAATGCACAATGTGTTCTTGTAGCGAGGAAACATGAAATAATTCATTGTAATTATATAGAGAGTGaatagtttatatattttttcttctagATGATTAACAAGTTTTTCATGTAAAATTTTGTCAAGTGAGTGGAATGTTAGAAAATAGGTCTTAACGGGATCTGGGTTACCTAGTTTACCATCtctgagaaaaaaagaaaaaaaaaacatggaaatGGGTAAATCCAGATCTGGATGGGAAACTAGTCCAGAAAATCATATACAATAGAACATTTGAAAATATGTTTTCAAGCTCAAGATATCTAGACCTCTTTTGAGACCTAATTTGATTTTCGAAGAAAAGCCTGTTGTATAAGCCCAGTACATTTCAATGGTTTTCCAAGAAAACTTGAACTCCTTagaaaaataacaacaacaacattgttaTTTTTATTCTTTATGACAAAATATGACTGTGCTCTGCTTCTGTGTATCTAAAAAGATGCATTGTGGGTCATGGGATTAGTCTATTTTGGTAACATGGTTTTGTGTTCCGTACATGGCAACTGTTTATATCATTAGCTGCAACCTGTAAATAATCCATTCTGCAACACTAGATGGATAAGATCTGTACCTTTGACAGATCCAATTGGAGTACTCAAGAATGCTAGAGGTATATTTGCTGAAAATGATACTTTAACTGGAAAAaggaattaaatatatttttctcttTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1839201 lncRNA downstream 51803 25773714 ~ 25773987 (-) True G1606657
TU1839188 lncRNA downstream 65765 25759730 ~ 25760025 (-) True G1606644
TU1839184 lncRNA downstream 69264 25756305 ~ 25756526 (-) True G1606640
TU1839182 lncRNA downstream 72474 25753011 ~ 25753316 (-) True G1606638
TU1839159 lncRNA downstream 102893 25722669 ~ 25722897 (-) True G1606616
TU1840996 lncRNA upstream 96228 25947513 ~ 25948260 (-) True G1608251
TU1841071 lncRNA upstream 189562 26040847 ~ 26041166 (-) True G1608319
TU1841084 lncRNA upstream 205854 26057139 ~ 26057509 (-) True efcab11
TU1841088 lncRNA upstream 210710 26061995 ~ 26062205 (-) True G1608336
TU1841094 lncRNA upstream 215027 26066312 ~ 26066515 (-) True G1608342
NM_001124268.1 mRNA downstream 140071 25678207 ~ 25685719 (-) False dio2
XM_036954482.1 mRNA downstream 917059 24847088 ~ 24908731 (-) False sptlc2a
XM_021573699.2 mRNA downstream 981639 24792012 ~ 24844151 (-) False LOC110497546
XM_021573697.2 mRNA downstream 1098272 24704456 ~ 24727518 (-) True LOC110497545
XM_036954481.1 mRNA downstream 1098278 24704456 ~ 24727512 (-) False LOC110497545
XM_036954500.1 mRNA upstream 41939 25893224 ~ 25971396 (-) False foxn3
XM_036954499.1 mRNA upstream 41939 25893224 ~ 26008243 (-) False foxn3
XM_036954501.1 mRNA upstream 41939 25893224 ~ 26008243 (-) True foxn3
XM_021573711.2 mRNA upstream 205821 26057106 ~ 26139726 (-) False efcab11
XM_036954503.1 mRNA upstream 205821 26057106 ~ 26139726 (-) False efcab11
TU1839109 other downstream 139688 25678348 ~ 25686102 (-) True dio2
TU1838926 other downstream 430578 25382760 ~ 25395212 (-) False G1606398
TU1838042 other downstream 969069 24852469 ~ 24856721 (-) True sptlc2a
TU1838053 other downstream 981653 24810720 ~ 24844137 (-) True LOC110497546
TU1837685 other downstream 1271820 24552538 ~ 24553970 (-) True LOC118941548
TU1841293 other upstream 572746 26424031 ~ 26427303 (-) True G1608529
TU1841342 other upstream 733653 26584938 ~ 26610983 (-) True G1608576
TU1841604 other upstream 1060112 26911397 ~ 26912437 (-) True shprh
TU1841644 other upstream 1086585 26937870 ~ 26941380 (-) True G1608844
TU1841799 other upstream 1344463 27195748 ~ 27201735 (-) True G1608988

Expression Profile