RNA id: XM_021573735.2


Basic Information

Item Value
RNA id XM_021573735.2
length 2071
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110497568
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26651469 ~ 26654910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGTATTTATTACACATCTTTGCTAGTAGTTAATCATTAATCATACAACATGgctgagaaagagacagatgcgAAGACTTATGCGAAAGCTTTGACAAGTTTTGTTGAAAATGGAAAAGCCCTATTGGAACTCGCTGAACAGGAGAGCAAAGAGGGACTTCTGCAAGACTACATCAGGAAGAAGATCCGTATTGAACTGGACCAATCACTACTGGGACTTATTCCAGCTGGGGCAAGGTTATTCACGAGCATGTCAGTGAAGAAGAAAAAGGACGCTGATGAACTATGGAAGAGAAGCTACCAATGCGCTGAATTGCAGGATGCTGTTGAGGACTTCTTGCAGCTGGGAGTGCAGTGGGATAGTTTTCTGGAGTACTTGGACAAAGAGCTACATCTGGGTGATAGAATCTTTGGTCAAGAGCCACAAGTAAAATGCCTGTCGCCTGACATACCCCTCATTGATGCCCAGACTGGAGGAACTCTGACGTTAGGGAagtaccttgggagaggtgagaaAGTGCTACTTGTGTTGATCCGTCAGTTCTCCTGCCTCCTCTGTCGAATCCATCTGAAAGATCTGGAGGCCCATAAGATTGCCCTGGATGCATGTTCAGTGCAAGTGGTGGTGGTGTCATTTGGCTGCAGAGAGGGGGCGTTGCATTGGCTGGCGGAGACAGGTTGCCAGTATGACATGGTGTTAGACCCACACAGGAAGGTGTACAGCGCTTTTGGCTTGAGAGCATCTCTAAAGAAAGTGTTGAACTTCAACAACATGCTCCTCTACGCTGAATACGTTGTGGCAAACCTGGAGTTTCCAAAAGCTCGGAGGAGACTTTGTCCTGGATGACCAGGGGAGGGTGCTGTTCTCTCACTGCTGTGACAGCCCTATAGACAGACCTGCTGTAGAGGACATACTGAAAGCCCTATAGAATGACCTGCAGTAGAGGACATGCTGGGTGCCATTCAGAAGGGATACCCAAACCTGTCAGGTTCAACATTATGTAAAATGACCTCATCTCATCTGATACAGAAATGGCTTTATCACAGGGAGATATCAGCTATAGACTATTGCCCTCAAATTCTtcccccctctaatcagggactgatttagacctgggacaccaggtgggtgaaattaattatcaggttgtagaacagaaaaccagcagtactccGGTCAACCATAGGGTAAGATTTGAATACCCTCTGGACTGAGATTATATTAGCCGCTCTCTTTCAATAGCTGCTGTACAACTCTGGCACTGGAGACTATAGTCCAGGGGTATTCAATCTTGCCCTACGAGGTTActtctggttttctgttctactaaTTGCACCCACCTGCTGTCCAAGGTCTAAATCTGTTCCTGATTAGAGTGGGAAGAATTTTTAAAaaacagtggaactggctttaaGTTCTAGATTTGAATTTGAAGCAAATCTTACATGCTCTAACAATCTATTAGAAGACTCTAGCTACACACTAACAGCTGATCAATCGAGAGAAACCTTATATGATATTCCCTAATTTCTTGTGAATTATGATTTTTATTGGTTTCCAATGAGATTTCTTATTATTTGCTTGCTGTTGTAGACCTGTTTGAAAGTGTTTCGGCTGGCGTAGATGTCGGTGATGTCACCATATGCTCTAACTTTGAGCTTAGTTCTTCTACGAACTGGGGCTACAAAATGTGGTACATAAGGTGCAAGCGTGCAGCACAGTTTTGATGATGTTGCTTAAATTCATGATTACACATAACCTACAGCACCAGTAACTAATATATTATTAAAGGCACTGCAGAAGAGGAGTTCACCTTATGGACATTCTTGGAAAGCACCCCCATGTCACTGCAATAGACACAAAGAGAAATAGTGTACTATTAAGGACCATAACTTGACTTCTTCACTTTTAAAAGGGCTAACTGcagcaaagatggtggataaatgttCACTCAGGCCATTTACCGTTGTCTACTTAAGGGGGTGGCTTAATGATGATTATATGATGTATATGTAATTGTATAGACATACAATAAAATTACCTAGGTGCATCAGCTCAACATTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1841438 lncRNA downstream 37045 26614211 ~ 26614424 (-) True G1608672
TU1841339 lncRNA downstream 39245 26611107 ~ 26612224 (-) True G1608574
TU1841340 lncRNA downstream 41313 26609397 ~ 26610156 (-) True G1608575
TU1841419 lncRNA downstream 70112 26580826 ~ 26581357 (-) True G1608653
TU1841409 lncRNA downstream 78862 26572360 ~ 26572607 (-) True G1608643
TU1841483 lncRNA upstream 43782 26698692 ~ 26963299 (-) True G1608712
TU1841552 lncRNA upstream 111941 26766851 ~ 26767159 (-) True G1608763
TU1841598 lncRNA upstream 201333 26856243 ~ 26857489 (-) True G1608804
TU1841663 lncRNA upstream 380392 27035302 ~ 27037775 (-) True G1608863
TU1841706 lncRNA upstream 408817 27063727 ~ 27065477 (-) True G1608904
XM_036954522.1 mRNA downstream 10935 26617454 ~ 26640534 (-) False LOC110498692
XM_036954523.1 mRNA downstream 10935 26617455 ~ 26640534 (-) True LOC110498692
trnal-cag-28 mRNA downstream 38018 26613369 ~ 26613451 (-) True trnal-cag-28
XM_036954520.1 mRNA downstream 324599 26313358 ~ 26326870 (-) True LOC110497562
XM_036954519.1 mRNA downstream 324600 26313358 ~ 26326869 (-) False LOC110497562
XM_021573730.2 mRNA upstream 103 26655013 ~ 26660529 (-) False LOC110497567
XM_036954524.1 mRNA upstream 203 26655113 ~ 26660880 (-) False LOC110497567
XM_021573729.2 mRNA upstream 203 26655113 ~ 26661730 (-) True LOC110497567
XM_021573736.2 mRNA upstream 14886 26669796 ~ 26680291 (-) False LOC110497570
XM_021573737.2 mRNA upstream 14886 26669796 ~ 26680291 (-) False LOC110497570
TU1841342 other downstream 40486 26584938 ~ 26610983 (-) True G1608576
TU1841293 other downstream 224166 26424031 ~ 26427303 (-) True G1608529
TU1840954 other downstream 818092 25830437 ~ 25833377 (-) True ston2
TU1839109 other downstream 965367 25678348 ~ 25686102 (-) True dio2
TU1838926 other downstream 1256257 25382760 ~ 25395212 (-) False G1606398
TU1841604 other upstream 256487 26911397 ~ 26912437 (-) True shprh
TU1841644 other upstream 282960 26937870 ~ 26941380 (-) True G1608844
TU1841799 other upstream 540838 27195748 ~ 27201735 (-) True G1608988
TU1841803 other upstream 551320 27206230 ~ 27207354 (-) True G1608992
TU1842195 other upstream 1223551 27878461 ~ 27878816 (-) True nkx2.9

Expression Profile