RNA id: TU1841344


Basic Information

Item Value
RNA id TU1841344
length 4170
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1608578
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 26563720 ~ 26567945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAATATTGTTATGGGTATTATTACCAAGGCGGCACGCCCCAGACTTCATATTAACAAAACATTTTCACTACTACAGGGTTtgaccccaaaaaatgtttttcctGAAGGGAGATCCTTTCACAGAAAGGACTATGGATACTTAGTGCAGACATACAGACACTTACTCGGTGTCAGTATGGccgtgtatatacagtgcatatcATAAGCAttcacccccaccacccccttggattttttttcacattttgttgagttaACAAAGTGGGATTGAACTGGATATAATTGTGATTTGTTGGTACATTTTTATcactaccccacacacacaattatgtgtaaggtctctcagtcgagTAGTgtatttcaagcacagattcaaacacaaagacAAGGGGGCTTTTCCAATGACTCACAAAGAATGACAcagattggtagatgggtaaaaagcaGACacagaatatccctttgagcatggtaaagttattaattaagcTTTAGATGGTGAACCAATACACCCAAgacacaggtgtccttcctaataACGGAGTTGCCagcagaggaaggaaacagctcagggatttcaccatgaggccatttaaaaaaaagtaacaacgtttaaaggctgtgatgggagaaaactgaagctagatcaacaatattgtagtaactccacaatactaccctaaatgacagagtgaaaaggctCTAAACAATTCATACTGCAACAAATGTGCCAAAGGACTTTTTGCTCTGAATAagttttatgtttggggcaaattcaatGCAACACATCGCCAAGTACTatgctccatattttcaagcatggtggtggctgcatcatgttatgggtattcttgtcattggcaaggattagggagtttttccacaggcaaaatcctagagaggaacctggttcagtcttctttccaccagacactgagagacaaatgcatctttcagcaggaaaataacctaaaacacaaggccaaatctacactgcagttacttaccaagatgttcctgagtggcctagttacagttttgacttaaacctGCTTGAAAAGctaatggcaagacttgaaaatggctgtctagcaatgatcaacaaccaacttgacagagcttgaagaagttTGAAAGAATAATGtgaaaatattgcacaatccaggtgtgcaaaggtctaagagacttacccaaaaagtctcacagctgcaatcgctgccaaaggtgtttctaacatgtattgttaGAAGTTACATATTTATCTAATCAAGACACActgtccatgacatagactgaccagttgaaagctatgatcccttagtgATGTTGCCTGGTAAACCcacatcaatcagtgtagatgaaggggaggagacatgttaaagaacgATTTGAGACAATTGAGTCATGGATTGTGAACTtgtgcaattcagagggtgaatgggcaagacaaaagagcctttgaatggggcatggtagtaggtgccaggcgcactggtttgagtgtgtcatcatgaactgcaacgctgccgagtttttcacacaacagtttcccatgtgtatcaagaatggtccacaacccaaaggacatccagccaacttgacagcactatgggaagcattggagtcaacatgggccaacatccctgtggaacgcttttgacaccttgtagagtccatgcccaaaaaattgaggctgttctgaaggggAAAAAACAGGGTGAAACTCAATTTTAGGAAGGTGctctgttttgtacactcagcgtatATGTGTGTCCTATTTTCCATGAATTCAAATGTAcatgagtattttgtgtagatcattgacaacaATAAATTTTGAAGAAATCCatgggggctgaatacttatgataTGCACTGAAGCCTAAGTCACCAGAGTAGAGAGTTTATCCGAATGCAAAAGTTTTCAGGTTGTGATTCTGTTTTTATGGCTATGTACCTGGACACACACTGGGTTAATATATCACCAATAATCTACCAGAAAACGATTCATTTCAACATGTGAACAACCTTCTTTCTGTTTCTCAGATACCCAATATTAATGAGTTGGAATATAAACTGTTACAGCGTTAATTTTTGCTTTGAAATCAGACAATGATATCAAATTCATAAGTGAATTAATTATTACACAtttctttccaacaattgtttcttGCTGCCTTGGCCTGATCTGTGTTTCTAGGCCAAGATGCTTTGCTCTGTGGTTCTAGGCCAAGATGCCATGCTCAGTATTCTAGGCCAACGTGTCCAGCTGATGAGACCAGCTGTGAAGAGAAGTGAAAATGTCAGGTCTCTCCACTGTACCACAGCAGAGCTGCTTCTGAAACATTCTAAAGGTTCCAGAAGTGTTTTAGAGGGCTCTAGAATGTTCTAGAATAAAGATCTCTGGAGCAGCAATGGAAAAGCTCAGCTAGAATGTTGATCCACACTGACAAATTATTGCTTAACTGAGGCACACAGTAGTTTTGAATTCCAAGTACATATTGAAGTAGTAATTTTTTGTTCATTACTCTAGCGATATTAAACCATGTGAATGAGGTTTGGAATTCAACTGTACATGCCTACTGTACTATCACTACACATAAAACGAGGAGGTCACTGAAACGGTCTTCTCAATAAGGTTTACTGACTGGGGTAGAAATGCAAAAGTACTGAATGTAAAACAAATTTGGAAGACAAACGCTAGATTCAATTTACATTGAGTAGGTACGGTTCGGAGATTTAAGAGTAAGAAATCTCTATGACGATAGCGAATAAAAGAGGCAAGAGAGGGCAGTCTTGTCTGTTTCTACACTTTAACAGAAAGTAATGTATAAGAAATCTAACTTTATATTTGTGAAGTGTTGGGTTTCACACCTTGCCTCTTGGCCAATTAAACGGATTGTTATCAATGTTCTTCAGCTACTGTACGTTGAAATCACGACTATACCTGGGTAAAAAAGGGCCCAATATTGAAAATAAGTGAATTTGGTGTCACAGGGTTGTAACACTGTCACATACACTCCTCGGACAGTTCATTAGGTACATCACAGCGTCTAGGGTTTACATCCAGTCAGCGGaggtcctgtgggcgaaaacagctcggTGACGACGGAGGTCAAAGGAGAAagaagaatcgtgcaagctaacaggcgggccacaaacagataAATAACAGTAcaacaacagtggtgtgcagaccGGCACAACGGAATGCACAACTCGtcgatccttgtcacggatgaGTTGGAACGGGCTGTTTGCAGCATAAATGTACCACCATCCGATCTGCAGCAACAGGCGTGATGCCATTGCgaggaccaacatccctgtggaatgtttccGACACCCAAAGTATTTGGGCtcttctggaggcaaaggggggggtCTGACCCGGTattagatgggtgtacctaataaactctCCGGTGAGTGTACTTTGCTTATAATACTGACACACACCAACTGCACACAAAGAATACCTTTTCAACATATACAACGAATCTCACTGTTCTAAAACACCCCATACAAAAAATATTACACTTTCTACTTCCAATCAGCTAAAATGATCAAATGAAAGAAACAAATGTAACAAGTTCCAATTTAAAATAGTTAtcgagacaaaacaaacaaaagacagttttaaggACTAACAAAGACAGCCGAGTGAAAAAAACAATAAACTACCAACATATAGAAAGAACAAAGTGAAAATGTCAGTTTCATAGCTGGCCTAAAGCCAACCCagctccattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattacatcTTACAGCTTTCCTCAGCtctgtacacagacagacaggtgagggCATGTAGAAACTCATCCTGCCCCAAGCATCAGACCTGGCACAGCCAATGATGTAGTCAGGAAGTCTTGAACCAGCTCATGACGTCATCTGGGCTACTTTTCACATGACAGGAACCTAACTACCACAGATTTAAATAAGTGCCACGTTTAACATAAAGCTAGGCTAGGGATGGTAGATGACATTAGGGTAATCCCCTTCATTGATTATTGGTTAATCtgctaaaactgtttgaataatgatGTTTAAACTCTGAAGTCAATGATTAAAAGTCCAATgtatttttatctcaatatcaaatcatttctgggtaacagttAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1841343 lncRNA downstream 1277 26561631 ~ 26562443 (-) True G1608577
TU1841405 lncRNA downstream 4494 26558944 ~ 26559226 (-) True G1608639
TU1841404 lncRNA downstream 5035 26558454 ~ 26558685 (-) True G1608638
TU1841401 lncRNA downstream 8690 26554828 ~ 26555030 (-) True G1608635
TU1841396 lncRNA downstream 14635 26548436 ~ 26549085 (-) True G1608630
TU1841409 lncRNA upstream 4415 26572360 ~ 26572607 (-) True G1608643
TU1841419 lncRNA upstream 12881 26580826 ~ 26581357 (-) True G1608653
TU1841340 lncRNA upstream 41452 26609397 ~ 26610156 (-) True G1608575
TU1841339 lncRNA upstream 43162 26611107 ~ 26612224 (-) True G1608574
TU1841438 lncRNA upstream 46266 26614211 ~ 26614424 (-) True G1608672
XM_036954520.1 mRNA downstream 236850 26313358 ~ 26326870 (-) True LOC110497562
XM_036954519.1 mRNA downstream 236851 26313358 ~ 26326869 (-) False LOC110497562
XM_021573714.2 mRNA downstream 300838 26229014 ~ 26262882 (-) False LOC110497555
XM_036954508.1 mRNA downstream 300838 26229014 ~ 26262882 (-) True LOC110497555
XM_036954509.1 mRNA downstream 300840 26229014 ~ 26262880 (-) False LOC110497555
trnal-cag-28 mRNA upstream 45424 26613369 ~ 26613451 (-) True trnal-cag-28
XM_036954522.1 mRNA upstream 49509 26617454 ~ 26640534 (-) False LOC110498692
XM_036954523.1 mRNA upstream 49510 26617455 ~ 26640534 (-) True LOC110498692
XM_021573731.2 mRNA upstream 83524 26651469 ~ 26654910 (-) False LOC110497568
XM_021573732.2 mRNA upstream 83524 26651469 ~ 26654910 (-) False LOC110497568
TU1841293 other downstream 136417 26424031 ~ 26427303 (-) True G1608529
TU1840954 other downstream 730343 25830437 ~ 25833377 (-) True ston2
TU1839109 other downstream 877618 25678348 ~ 25686102 (-) True dio2
TU1838926 other downstream 1168508 25382760 ~ 25395212 (-) False G1606398
TU1838042 other downstream 1706999 24852469 ~ 24856721 (-) True sptlc2a
TU1841342 other upstream 16993 26584938 ~ 26610983 (-) True G1608576
TU1841604 other upstream 343452 26911397 ~ 26912437 (-) True shprh
TU1841644 other upstream 369925 26937870 ~ 26941380 (-) True G1608844
TU1841799 other upstream 627803 27195748 ~ 27201735 (-) True G1608988
TU1841803 other upstream 638285 27206230 ~ 27207354 (-) True G1608992

Expression Profile