RNA id: XR_005037944.1


Basic Information

Item Value
RNA id XR_005037944.1
length 3555
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118942046
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17838093 ~ 17843090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttatttcagaaaatcacagaaatctcgtagaactccgaagcacactttaaaaagatttgtatgaacaagctgcaactggatctgtaactgtttggtgacaaaccacacaAATTACTCACCAGACAACTTCGAAAAAATGTGAGTGACAGAATGATTCACAAAGTTAAATCTGCATCTGGGGAATTACTCTCTTCCCCCAAAGACATCAATGACAGATTCCGGCAGTTTTATGAGACTCTATATACATCTAAAGCGGATCCTATAACCCCTTAATTATGCAAACATTTTTGGAGGACTGTAATCTTCCTGCCCTTGAACCAGGAAGATTATAACTTCCTGAATAAGGAAATATCTCTTGATGAAATTCAAGAAACAATTAAATCTCTAAAGAGTGGCACCCCGGGCCCAGATGGATACCCTGGTGAATTCTATAAAACATTCAGCAACATGCTCTCTCCCTACCTGCACAAAATGTTTGTTCAGGCCAATGAACAATGTCCTTCTACTTTGGACGAAGCGTTCATTACAGTTATACATAAGAAGGGTAAGGATCCAGAAGAGGTAGGGtcatacagaccaatatctctcctTAATACAGACCAAAAGATTTTAGCAGGCTTAGCACTTTAATTGGCAAATTGGTCCATTCGGATCAGACCGGCTTTATCCCTAACAGAAACGCATTCTTCAATCTCAATATTATGTATTCTCAGATGTTACCCAACGTGGACCTTGCCGTCATATCTCTTGACGCCGAAAAGGCCTTTGACCAAGTTCctacagaaatgtaatattggaGATGAGTTCATAAATTGGATCCAGCTTTTATATAGGAACCCCTGTGCCAGAATACTCACTAACCAATCATTGTCGCCCCGATTTAACCTTAACGGGGGGACAAGGCAGGGTTGTGCGCTGTCGCCTATGCTCTTCGCCCTAATTATCGAACCGCTCGCTCAGACGATTAGATCTCATGCAGCAATCCACAGCTATAATACTAAAGATACTCTAAATAAGATTTCCCTATACGCAGATGACATCCTCCTCTATGTAACAGAACCCCAGGCTAGTATCCCAGCTATTCTTGATGTGATCAATTTGTTTGGTACCTTCTCGGGATACAGAATAAATTGGAACAAGAGTGAATTAATGCCCATACGGTCGCAAAACACCTCCTGGCTAGAACCTCTCCCATTTAAGTTATCTTCAGAAAAATTGACCTACCTAGGAATTGTAGTTACCAATCAATACACCTTACTATTTAAAGAGAATTTCCCCCCTCTGATACAAAAACTCAAAGCAAACATACTTTTACATAAACATACATAAACATATTTTGGAgaactctcccaatttctctACTCGGAAGAATTAATGCCATTAAAATGGTCTTCTTACCACAACTGCTCTACCTATATCAGAACATCCCAGTATTCATACCTAAATCCTTTCATAAACAACTGGACTCAATTATCAATCCTTTcatctgggattataaaacacacaggataggtaAAAAACACCTCTGTAAATCCAAGATGGAAGGAGGATTGTCTCTCCCAAATTGTATATTTTATTGGGCCGCTAACCTGGGCTGCTAACCTCCGCGTTGTTACGTTTCTGCTGGATGACGCACTTCCGGCATCCAGCTGGCTTACTATGGAGCGTGAGGAGTGTCACCCCTTCTCTATTGGTGCTGTGATTTTGTCGCCTGTCAATCTGGAGATGTCACTTTATTGTAACAATCCTATTATACATAGCACAGTCCGAATATGGAAGCAAATTAAAGTCCACTTTGAGCTTAGACCAATGTCATTCATGCTCCCTGTCGCCAGGAATCCCTCCTTTGCCCCTTCTAACCTTGATAACACCTTTGAGCGATGGGGGGAGCTGGGGATAAGTACCATAGGGGATTTATACATAGAAGGGACCTTTGCTTCCTTTGAGTTGCTGAGGGAAACATaattttttcagatacctacaAATTAGAGACTACGTTAGAAAACACCTCCCAACATTTGGGAATGCTAAACCTTCCATGTTTGACAGATGCATAAAAATATGCCCCACCTCAGATAAACTGATATTGATATATGATGCTTTTCAATCTGTTAGCACACCTTCTACAGatgccatcaaggcaaaatgggaggaagaactagggACTGACATTTCTGTGGCAGACTGGGAAGAGAGCTTGGAGTATATCCACACATGCTCCATTAATTCCAGACATCGTCTCATACAATTCAAGGTCATTACCTGGACCAGAAGAGGCTAAAACAGGGCCTGTACCGCCACCCATGGGATGACATCTCCTATGTGCTTCCTGAACACATGTCAATGTAACTGATGACAGCGAGTCGGCACCTCTGGATGTCAACACTCGGATATGACGGGAAGCATTTTCACCTTATCACTTCAACAACCTCTGCCTTTGGGCAGGGTAAATCCAGAGGTGGGGGGGATATGGGGGAAGAGGGGAGCGTTAGTTTTATTAGGTCACTAAAGAAAAAGGGAATAATTTACGTTATTTAAGTTATGAGTTCAATCGTTAACAAAAAAAAGGAGCCGAACCAATGCAAGCTGCAGCTGTGGTCACACTAGGTGACTGGGAAAACTAGGTCACCGGTTCACAAATGGGATAGTGGCTTTTTGACCATGCCACCTGGTTGTTTGGTCCATCGCCTACTCGCttatattttattttcatatcTCTTACTAAACTCTCAAACGATTAACAGTTGGTTGAGCTGTATAATATAGGGCTAGCCCTGCTTTAGGCCTCTAGGGTGTGTGCTGTTGAAAGTTAGCATGCTTTCTGGGTGACTTGGTAATGCACATAACATGAACACTGGCTTGCCTATGGAGAAGTAGTCTTGGTCGGTAAACCTGCATCCCTCAATGGAGTGTAAGCCTTGAACGATCCACCGTCATGTACATTACAAAACCAAAGTATTGTGTGAGGTTTTATTTACACATTTAATCTAGTTTCCGACCTTAATCCCCTTCCAAAGTTGTGTAGCCTATTATGGTGTGTACTCTGTGGCTGTTCAAGATAAGGGGGCACGGTTTAACTAGCTGAATGTTAGTGTTGATTTGCcactgcctttttttttttttttaggatccCAATTATCTGTTGCAaaagcaacagctactcttcctgatgtCCTTTCTCATCCCCTCTGTCATTGGACGAAACGATCATGTTAACTTTATTTTCATCCATTTAGATTTCAAGAAAttacaaatgtgttattttaaaatgtttcaaAATAAAGGAAAAGGCAATAAACAGTCCTACTTTTGAAGGGGTTAATTGCTTTAAAATGTGAGTCTTAAATGCATCTTTTGCGAGGGACCATGAAGGCAGTGTATTTTATCTGGGAAAATAGTGTCTGATTTGCACGTTATGTCTAGATTATTGCTACCAGTAGCCATTTTTCTTTGTCCTCAATGTTCTGTGACAGGCATGTTTGTACTTCGTTTTATTTAAATGTGAATTAAAAATGCTTCTTAGTTTATTAAAACCAAGCATGTCTAACTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1910907 lncRNA upstream 5042 17828766 ~ 17833051 (+) True G1670159
TU1910906 lncRNA upstream 21601 17816179 ~ 17816492 (+) True G1670158
TU1910845 lncRNA upstream 25386 17762315 ~ 17812707 (+) True G1670125
TU1910838 lncRNA upstream 74942 17741296 ~ 17763151 (+) False G1670125
TU1910849 lncRNA upstream 81684 17748210 ~ 17756409 (+) True G1670127
TU1910926 lncRNA downstream 163155 18006245 ~ 18006459 (+) True G1670174
TU1910969 lncRNA downstream 206972 18050062 ~ 18050619 (+) True G1670208
TU1910970 lncRNA downstream 232010 18075100 ~ 18132470 (+) False G1670209
TU1910971 lncRNA downstream 232010 18075100 ~ 18121167 (+) False G1670209
TU1910975 lncRNA downstream 232010 18075100 ~ 18115759 (+) False G1670209
XR_005037943.1 mRNA upstream 222643 17610413 ~ 17615450 (+) False LOC118942045
XR_005037942.1 mRNA upstream 232927 17600129 ~ 17605166 (+) True LOC118942044
XR_005037941.1 mRNA upstream 250906 17580590 ~ 17587187 (+) True LOC118942043
LOC118942042 mRNA upstream 342352 17484324 ~ 17495741 (+) True LOC118942042
LOC118941996 mRNA upstream 358162 17476413 ~ 17479931 (+) True LOC118941996
XR_005037951.1 mRNA downstream 1251792 19094882 ~ 19185972 (+) False LOC110499153
XM_021576100.2 mRNA downstream 1251792 19094882 ~ 19201695 (+) False LOC110499153
XM_021576096.2 mRNA downstream 1364162 19207252 ~ 19242695 (+) True LOC110499151
XM_021576095.2 mRNA downstream 1452033 19295123 ~ 19303669 (+) True LOC110499149
XM_021576087.2 mRNA downstream 1468280 19311370 ~ 19350990 (+) False LOC110499145
TU1910846 other upstream 58719 17717036 ~ 17779374 (+) False G1670125
TU1910848 other upstream 64391 17767481 ~ 17773702 (+) True G1670126
TU1910852 other upstream 77281 17752294 ~ 17760812 (+) True G1670129
TU1910833 other upstream 97550 17717036 ~ 17740543 (+) False G1670125
TU1910783 other upstream 260831 17572831 ~ 17577262 (+) True G1670091
TU1910974 other downstream 208521 18051611 ~ 18121167 (+) False G1670209
TU1910976 other downstream 208521 18051611 ~ 18110223 (+) False G1670209
TU1910972 other downstream 232010 18075100 ~ 18095418 (+) False G1670209
TU1911253 other downstream 1251954 19095044 ~ 19125236 (+) False LOC110499153
TU1911957 other downstream 2384705 20227795 ~ 20228168 (+) True G1671091

Expression Profile