RNA id: XM_021576325.2


Basic Information

Item Value
RNA id XM_021576325.2
length 2304
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110499283
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27676593 ~ 27683907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAAGTTGTGTACGGTGTAGCCTGCCGATTGGAGCAACGTCCTGAGGTTTGGCTGTACCGGAAATGCCTCAATTTATTTAGACAGACAAAAGGCTCTCAAGTCATCTAAAATAACAATAGCTTATTCATATAGACATTCAAATACGTTTCATATAGTTTTACATAGGCCTATAGACTCGACAAAATAAAACATGGTCGGGATAGGATTAGCCCACATTTCCCTGATATTCGTTTTATGTCAACGTCATGTCGACTCTTACGTTCCTCCTCCCGTCAACGTGAGCCTCATCTGCCACAATTTTCACAATGTGATCTATTGGAACTACAgtgaaccatctctgcagccacAGTTCAATGTGGAAATGACAAGAAAATATTCTGGTGCTGCCTTGGTTTGTTCAAACACTTCCCTCTACCACTGCGATGTCTCCTCATTTACCAAAGTAATAGAAGAGGGCTACCGTTTCATATTGACTGCTGTTGGACAGAATACCAATTCTCCCGAAATTTCATTCACCTACGAtgatacagtgtattcagacgTGGTGGTACATTgcTCATTGGATTTCCCACCTGTCAACATCTCTGCTGTATCTGATCAAATTATCAAAGTTCAATTCATTCACCCATTTCACATCTACAAATATGCCATCATCAAAAATGAAAGACCGGATCATAAGGAATTTCATTACATGGTTGTCGCAGAAGATCCGTTGAAAGAGCATAGTTTTACCTGCTCCTACAAGCAACACCATGTGTGTGAGGCTGAAATACCAGTCGATGGAAAGATGGATAGGCACTGCGTCAAGATGAAAGGAAAAATGAACAATGTTCATGTCTCAGCTCACCAGAACATATGCATTGAGGGGAAGCATGGGGATTCTGGTCCTAGCTACACTGCCCTCTACATTGTGATCCCTATCGTTGCCATGGTGGTGATTGCGTTCATCGTGTGGCTGATATACAGGAAACTGACAAGCGGCTCATTCCCTCAACCAAAGATTTTGGCTTCCGTGCTGACACATATGAGTTCAGGTGAGTCCCTTATGCAGCCTGAAAGAGACATTCTGAGTGAGTTACAAACAGGTGGCTCCCCCCTGCTGCAGACCCCCATGGAATCTTTGCCAGATGAGACCCTCACAGTCATCAGTACCCCCCAGGAAGAGGTCCTCCGCCTCCCCATTGGACTGAAGGACCAGGAGTGGAGCGGTGGGGAGGTCATGTTGCCTAACGAGGGGTCAGGCTCTTCACTGCAGGTAACGAGAGAGTTGGGACTGGAGGTGAAGAGTGACTTATCTGAGCTGTCGGACTATGACTGCCCCCATAGACCTGTGATTATTCCTGTGATAGAGGAGATGAGTCCTGGGGACATTGTTACAGGATACAAGATCTGAGTTTCTCTCAAGAGAAAGTATGGTGATTTATTTACATATGCTCAGCTCGTGCATCTACTTAACCACACCTGAATCTGTTTGGGGTAGAGCAGGGTATTCAGTTTAGTCTTTGATTGGTTGTTCTAGGCCTACAGCCTGGAGTCCTACCAATACTTTTCCTGTTCCTTTAACCATTTAAATGGGCAGCCTatggtggagatggagaggataATCAGAGGGGTAACCTGGGACTGTTGCTTACTCAGGTGAACCAGGGATAGTGAAAACCAAGTGGTCTTGAATGCTGGGAACTGCCCCATTGTAATGTTGAATTTCATTAGACCGAATTAATACATTTCCGACAgcatatttgtaaaaaaaaaaaaaattaaaaagtgttCCTCTTGTCCATTCTTTTACTGTGCCTACTTGAGTGACATGACTGTTTTCTAAGGTAGCAAGAGAATAAGGGTTGCAAGAGCAGAATGAATGATATTCATTAGGTTATTGTCTTGTGCTGTGTATATTAGTTCTATTTGCACTTTTTACACAACTGTCATACATGTACAATGTTTCAAAATGTATTATTAGGTCCTATTAATTTCAGATGACCAAGTTATACCAATGCAATTGGATTGATGTGGTGATAATAATGAATGTTGTTATCAGTGCCTTGCTGTTTGCCCTATACCTAATTATTTAGTTTTTAATTGTGTACAATTTTGACGCTATACTTTTCATACAGCTaaaattatatataaaaaaagtctGTGCAAACTAATTCTGTTGTATTTGTTTTAAATCATCTTTCCCCAATAATTTCCCTTGTcttcatttttttgtattttctttgcaTAATATACAATCAAAGCTAATTCAATGGATTATTGTAATTACTATGTTAATAAATGCAGATTTGAAAGAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922299 lncRNA upstream 1313 27674929 ~ 27675280 (+) True G1680421
TU1922298 lncRNA upstream 2109 27674040 ~ 27674484 (+) True G1680420
TU1922293 lncRNA upstream 5336 27671021 ~ 27671257 (+) True G1680415
TU1922290 lncRNA upstream 9513 27666772 ~ 27667080 (+) True G1680412
TU1922289 lncRNA upstream 9969 27666381 ~ 27666624 (+) True G1680411
TU1922301 lncRNA downstream 5064 27688971 ~ 27693140 (+) True G1680423
TU1922508 lncRNA downstream 24325 27708232 ~ 27708458 (+) True G1680611
TU1922544 lncRNA downstream 49442 27733349 ~ 27734096 (+) True G1680647
TU1922592 lncRNA downstream 83711 27767618 ~ 27768095 (+) True G1680694
TU1922604 lncRNA downstream 103628 27787535 ~ 27788023 (+) True G1680705
XM_036956108.1 mRNA upstream 49808 27610623 ~ 27626785 (+) False map3k21
XM_036956107.1 mRNA upstream 49808 27610626 ~ 27626785 (+) False map3k21
XM_021576321.2 mRNA upstream 49808 27610674 ~ 27626785 (+) False map3k21
XM_021576323.2 mRNA upstream 49808 27610674 ~ 27626785 (+) False map3k21
XM_021576324.2 mRNA upstream 49808 27610675 ~ 27626785 (+) True map3k21
XM_036956110.1 mRNA downstream 86835 27770742 ~ 27786519 (+) False LOC100136337
XM_036956109.1 mRNA downstream 87374 27771281 ~ 27786519 (+) True LOC100136337
XM_021576338.2 mRNA downstream 130482 27814389 ~ 27858095 (+) False arfgef3
XM_021576329.2 mRNA downstream 131310 27815217 ~ 27858095 (+) False arfgef3
XM_021576330.2 mRNA downstream 131310 27815217 ~ 27858095 (+) False arfgef3
TU1922082 other upstream 300774 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 589130 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 900913 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1020482 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1043395 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 1033454 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1094099 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1773321 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1888528 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1890851 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile