RNA id: XM_036956110.1


Basic Information

Item Value
RNA id XM_036956110.1
length 4719
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC100136337
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27770742 ~ 27786519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTGCTCACTAACGCTCGTCTGTGCACGGTAGGTGGGACCAGGCATTTCAGTACGCTATTCGTCACCAACACAACCCGGAGAACGTAGCCTAATGGCGTTTCGCTCAGACACCACCTATTGTGTGTGAGATGTAACTACGTCTGAAGGTTGTGACAGAGATATGTGGAAAGTCCCTAACACTGGAAATCCCCTTTAGTCAGTTTTTTTTCTCGGTCTACATTAACTAAATTAAGTTGGGGGACGTGATCTATGCTTTGACGGTCTATACAGTGAATCAACCAAAATAGAATTGATTGTGCAGAAAGCTGAATGGCGTTGTGTGGACTGCTGCGGTTAACCTGATTGAAGTGGCAGAGGACTACCCGGAGCATCCTTAGGCTTTGTTGGTAGTCTTTGTACCGACATATTGCACAGTTCTGCGTTTGTACACATTACATCTGGTGAACACCATGTCCCAGGGACAGAATTTCCTGCCCAAGTTCCTCTTTGTGAGTAACCTGCTGAAAGCGGTCAAGATCCGGGAGCGGGTGCCCAACGATGTGGTGAAGCCGGCGGCCAGCGGAGGCCTGATGCACCACCTGCGGGGCATGCACCGCTACACCCTGGAGATGATCCGCATGAGCCAGTTCCCCCAGGCCTTCCAACAGGTCATCCAGGCAGCCATCTTGGACAGGGCCATGCAGAGCTCCCTAGAGCAGGAGAAGAAGCTCAACTGGTGCCGCGAGGTCAAGAAGATGGTGCCATTGAGAACCAATGGAGATGGGAACTGTCTTCTCCATGCTGCATCTCAGTACATGCTGGGGGTGCAGGACACAGACCTTGTCCTGAGGAAGGCCCTGTTCAGCGTGCTAAAGGAGACAGACACGGGCAACTTCAGAGCCCGTTTCCAGACTGAGCTGCTGCAGTCTCAGGAGTTCACCCAGACTGGCCTGCGTTACAGCACCATGAATtgggaggaggaatgggagaagatcATCAAGATGGCATCACCTGTATCCAGCAGCAACGGGCTGCAGTTTGACTCCCTGGAAGACATACACATCTTTGTCCTCTCAAACATCCTCCGCAGGCCCATCATCGTCATCGCAGATCAGGTGCTACGTAGCATGAAATcctgctcctccttctctcccctcaatGTGGGGGGCATCTACCTGCCTTTACACTGGCCTCCAGGGGAGTGCTACAAGTACCCCATAGTGCTCGGCTACGACTCCCAGCACTTTGCCCCCCTCATCACCATCAAAGACAGTGGCCCGGAGATCCGAGCGGTGCCGCTGATCAACCCGGGTCGTGGGGACTTCGAGGAGCTCAAGGTGCACTTTCTGATGGAGAAGGAGCAGACGCAGAAGGAGAGGCTGCTGAAGGACTACCTGATGCTGATTGAAATCCCTGTCATTGGACTGGGCTATGACACCACACGCATCATCAACGCTGCCAGGCTGGATGAAGGGAACCTGCCTGAGGACATGAACCTGATGGAGGACTACCTCCAGTTGGTCAACCACGAGTACAAGCGCTGGCAGGAAGACAAGGACCAACTGTGGGCCGCCCAGCCCCATAGACCACCCCCCTTCTCCGTGTCCCAGCTGTCCCTTATCGAGATCCGCTGTGCCACACCACGATGCACCTTCTACGTCTCCGTGGACACCCAGCCACACTGCCACGAGTGCTTTGAGAAACGCCAGGGCCAGCCTAATGGGAGGATAGAGGCTGCTCCTACGAAAGGCGGTGGTCAGGCTTGTGAGCCAGAGTGTAGTAGTGGCTGCCGGGCAGTGTTATCCAGCCCACGCTCCGTCCCTCCCCCACCCACGGCGCCCAGCCTCAGCCTGTACAGCGAGACCCACGCCATGAAGTGCAAGACACCCGGCTGCCTTTTCACCCTCAGCGTGGAGCACGATGGTCTGTGTGAACGCTGCTTCAACACCCGGCAGAATGCACCCACTGCTGATGGCCCCTCGGGCCTCCCCCTGCCTGCCCACCTCGGCTGGCCCCAGTGGGGCGCGGGACGGGAGCAGGAGACAGAGCGGTGCAACGTGTGCCACCAGAAGGCCTTCAGGATATTTAACGGACTGTGCCCCCCGTGCCTCCAGAGGACTGCTACGGAGAGGGGCGAGGATCCCCAGCCACCGGCAACAGCCAGGATAGAGGCCTCCTCTGGGTCGTTATGGACCCAGCCCCAGCCAAGGGACTCTGAGCGCTCAGGCACCTCGGCTCTCAACGGCCACACGTCTGGCCGGCCCTGTAAGAGGTCGGGATGCCAGTTCTTCGGGACTCAACAGAATCTTGGATTCTGCACCATCTGTTACCTGGACTATCAGACCAACCACCTGGCGACCCCTCATCCTCCCCCTGCTCCAATCCAGAGTCGTCACGCGTCAGAGGCAGGTTTCCAGGATGCTTCGCGCTGTCGGGGCCCGGACTGTGGGGCCATGGGCAAGGTCATGCTGGAGGGTTACTGCAACAAGTGCTACGTAAAGGAGCAGAGCACCAGGCTCAACCAGGCTGCTACCAGGGCTCCCGGCACCCACTCCCCTCCACTGGTCATGcgaACAGCTAAACCAGAAAGAGACAGAACCAGACAGAcgcagacccagacccagacccaggcaACGTGTAGGCGGAGTGGCTGCAGTAACATCTCCCCCGGCTGCACAGACCTGTGTCCAGAGTGCCACACGCGAAACACgcgggggcagagagagagtcgCAGGGAGAGGGCAGGGGCACCTAAAGAGAAGACAAAGCAGCGCTGTAAAACCCTAGGCTGTGAGCACTATGCTAACCAAGAGAAGCAAGGCTACTGTAATGAATGTGACCTCTTTAAGCAGATCTACAGGGGGTGAGCCCAAAGGTTTGGGGAAGATTAAAATGGCCGTGCCACGATGCTAGTCAATGCATCTCTGAAACTAGTGACCTTACGGCCAAAAGCCCATTTTAAAATGTGTTCATGAAGAGCGGGGGCAGTAGAAATGGCCGGCAGAATACCTCTTAGTGCAATTATTATTATCTCACGTGTACAGGACGAGAGGTGAGGTATACGTGTCATAAAACTGAcaacatatgtacagtatgtatctaaGTACATACTGTATCATGCTGGACTACTGATTGTATCTTGAAAAAAGCGCAATGTGTAAACTGCTTAATAATACGGCCAAGGAATGATCTATCAAGCAGCTAGCTACCTACACAATAATGTGATAAACCACAGCTTTTGTTTAAGAACCTCATTGACCAAAGTTCTGACAAGTGCAGAGCTGTGCCAAAGCCATCATGCACTGCCAAAAGGAGTTTGTTTAGTCAAAATTCGGTTTTAAACAGGAGTAGTTACAGTCTCAAAAACTGCACCTACCTAGACAGCTAATGTACAGTCTCTGAGCATTTGCGAGTGGGCAGGACCCTTAAAAGTATGGTGCTACTTGTACAGAAAGCAAACATGGAGGTTCTGTGACATGACAGAGAAAACAGTAGTTAGAACTCAATAATATTCAACCTCTCCCACCGCCGCATAGATGTCTGCTGGCAGTACAGATGCTGTTGCCTTTTGTGGTTGTGTTCTTGTTTGCTGTTGACCACTTTTGTATCTGTACTGTAGAAATACAAGTTAATGCTTGCCCTGAGAGTTGTGCCGTGTTACAGTATGTTCTATATGTGGCCTCTGTTAATGCTGGGCAATTACCTTCACACAGACTCCAAGTTAATGACTAACTTACAGAGAAAGATAAGAGCAGAGTTCAGTTGATCTCGTCCAAGGGGATTGCCAGTGAAGAAAGGAGTGTGTGTttgaaaggaaaggaaagaaaaCATAAGTGCAGGAGAAATCCCCTTAGAGCTCAATACCTCagtcagaggagggagggaggccaaGAGAAGGTAAACAAATACACCTGTGGGGAAAAAAATGAAAGAGCTTGGTTCACACCATGTAGCTGTGGCATGGCAGCCAGTGCTCTTAGCTACCATGAGCTGGTAGGCCCCAGCCTGCAGTAAAATACCTCTCCACCCGTAGAACCTGGCTTGCAGTAGAGTACCTCTTCATCATAGGGGCTCTGCTGAAATCTGCTCTGCTCACACGATGCCTCACTCCAGTACTCACACCTGTGTGATATGCGCAAGCAAACTGACATTCCTTTTCTtcctttatatctatatatttgaACTGACATTTTTGTTCCTGCCAAAAAACGTGCCATCATCTGCAAAGCATTCTCGTGACCTCTTAACCAACGCAACGTTGAAACAAAAGAACGTCTGTTCAATATGCATATCTGACGTCTGTTAAAAATGAGATTTATGGTAGCCTAGATAGAGATCTGGTCTTTAATCAGATGataaacataatataatataagggCAATTAGTAGTCAGTTCATTACGAGACATCAAAGGAGTACATGCTCTTTGGTTATGGGTCGGAACTCTGATCATCACATACTACTTGCACAATACTTAATAAGCTGCTCCGGAATTTAGGATGGTACTTTCCTTGACATGCATAGGGACATTCCAATGTTAGACGTAAACACGCAAAGTTGTAACAAAACATGCAAAAGTTGTGAGATACATTTTTGTGTAACCTTTCAATAATAGGGTATTGTATGAAAagctttgttttgtttgttaagTATTTATTCATATCAAATATTATCTGTATTGTGCGTTTCAATACTTATTTATATGTTGTCCTGAAATGAATTATTTTTATTAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922592 lncRNA upstream 2647 27767618 ~ 27768095 (+) True G1680694
TU1922544 lncRNA upstream 36646 27733349 ~ 27734096 (+) True G1680647
TU1922508 lncRNA upstream 62284 27708232 ~ 27708458 (+) True G1680611
TU1922301 lncRNA upstream 77602 27688971 ~ 27693140 (+) True G1680423
TU1922299 lncRNA upstream 95462 27674929 ~ 27675280 (+) True G1680421
TU1922604 lncRNA downstream 1016 27787535 ~ 27788023 (+) True G1680705
TU1922610 lncRNA downstream 7684 27794203 ~ 27794710 (+) True G1680711
TU1922613 lncRNA downstream 11484 27798003 ~ 27798398 (+) True G1680714
TU1922623 lncRNA downstream 18975 27805494 ~ 27808926 (+) True G1680722
TU1922692 lncRNA downstream 150675 27937194 ~ 27937697 (+) True G1680780
XM_021576325.2 mRNA upstream 86835 27676593 ~ 27683907 (+) True LOC110499283
XM_036956108.1 mRNA upstream 143957 27610623 ~ 27626785 (+) False map3k21
XM_021576338.2 mRNA downstream 27870 27814389 ~ 27858095 (+) False arfgef3
XM_021576329.2 mRNA downstream 28698 27815217 ~ 27858095 (+) False arfgef3
XM_021576330.2 mRNA downstream 28698 27815217 ~ 27858095 (+) False arfgef3
XM_021576332.2 mRNA downstream 28698 27815217 ~ 27858095 (+) False arfgef3
XM_021576333.2 mRNA downstream 28698 27815217 ~ 27858095 (+) False arfgef3
TU1922082 other upstream 394923 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 683279 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 995062 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1114631 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1137544 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 930842 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 991487 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1670709 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1785916 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1788239 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile