RNA id: TU1933598


Basic Information

Item Value
RNA id TU1933598
length 808
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC110499541
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36695775 ~ 36809459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTATTCGTGGTACATTTGTCGATGTACATATTAGATACAAGCCTTGTGTTTCtctacacagcaaattggccagtgttaactAGTGTTGCTTTTTCAGTGTAGCGTTTCCagtgttgattcaggagttaaatATAGCACTGTAAATATTTAAAGAACcacagtgttggtgttaataaccagagttaAACCAAAACCTctgccatcattatcatatttcccagcatgctctattgcaggttgaattttagaattgtttgtttaaatatctatgttttttttttgcatgcaCATTGATTAATTGATGTTATTCTACTTAAAGGGCTCAGTGCAGTCCAAAATGTGATTTTccagtattttatatatatatttccacactatgaggatGGAATactactgtgaaattgtgaaaattatgaaaatgcccttttagtgtaagagctgtttgaaaagacgcctgaaatttcagcctgttttagtGGTATGGGGCTGTAAATGagctaatagaccaataagagagttccaaactACCTTGTCAATAATGTCTAGTTTTCCCCTCccccactcagacccctcccagacagtcctggctagaagctatttttattttatttttgacaattttaattgaaaacaatcacagtaagatacttaactgttacccagaaatgatttgatgttgAGATAAAAACTGCTGCATCGGACcttataaaatataaataacatcCATTTTTCTGAAATAATCTAATCTGTTACTTGGACTTAATGCACCCTTTACTGAAATGGccgttccagtttagatgggttA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933684 lncRNA upstream 11296 36795942 ~ 36796369 (+) True G1690615
TU1933683 lncRNA upstream 13030 36794217 ~ 36794635 (+) True G1690614
TU1933662 lncRNA upstream 44303 36763150 ~ 36763362 (+) True G1690593
TU1933660 lncRNA upstream 46047 36761334 ~ 36761618 (+) True G1690591
TU1933658 lncRNA upstream 50528 36756921 ~ 36757137 (+) True G1690589
TU1933597 lncRNA downstream 3493 36811965 ~ 36813583 (+) True G1690531
TU1933834 lncRNA downstream 50307 36858779 ~ 36860426 (+) True G1690747
TU1933848 lncRNA downstream 75524 36883996 ~ 36884998 (+) True G1690757
TU1933872 lncRNA downstream 98464 36906936 ~ 36916416 (+) False G1690772
TU1933871 lncRNA downstream 99937 36908409 ~ 36916416 (+) True G1690772
XM_036955562.1 mRNA upstream 223575 36578726 ~ 36584090 (+) False LOC118942015
XM_036956295.1 mRNA upstream 242835 36553879 ~ 36564830 (+) False LOC110499435
XM_036956294.1 mRNA upstream 266760 36437205 ~ 36540905 (+) True LOC110499434
XR_005038403.1 mRNA upstream 383804 36423746 ~ 36423861 (+) True LOC118942466
XM_021576572.2 mRNA upstream 560153 36207378 ~ 36247512 (+) True LOC110499432
XM_021576580.2 mRNA downstream 38831 36847303 ~ 36849071 (+) True LOC110499437
XR_005038405.1 mRNA downstream 95358 36903830 ~ 36903945 (+) True LOC118942468
XR_005038001.1 mRNA downstream 98178 36906650 ~ 36909570 (+) False LOC118942068
XR_005038002.1 mRNA downstream 98639 36907111 ~ 36909570 (+) True LOC118942068
XR_002469960.2 mRNA downstream 105852 36914324 ~ 36916187 (+) True LOC110499440
TU1933112 other upstream 494967 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 494967 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 531722 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 542684 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 682275 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 69579 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 733448 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 842154 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 996071 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1414033 38222505 ~ 38222735 (+) True G1691990

Expression Profile