RNA id: TU1935706


Basic Information

Item Value
RNA id TU1935706
length 1204
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC110499544
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38594819 ~ 38638772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaacacttaaaataaggtctgtgtttggtGTAGACTTACCGTGACGTGACGTTTTGattaccatgtaaatctctcttcAGTCTTTCATCAATATAttcgcctgtatttacccccccaaaaaaattaaatgctaattagctgctaatgttgCTATCATAAAGATCTACAAATGTCGTGATGATCTGgactgccgaatcgaggcaaaggtaagaatctctggatcacaggaggctactgaggggaggctcataataacgtctggaatggcatcaaacacaaggAAAGCATGTGttggggcctcctgggtggcgcagtggttaagggcgctgtcctgcagcgccagctgtgccatcaggctctgtcgtaaccggccgcgaccgggaggtccgtggggcgacgcacaattgggctagcgtcgtccgggttagggagggtttggccggtaaggGATGTCCTTGacacatcgcgcaccagcgactcctgtggcgggccggggtgcagtgcacgctaacgaaggttgccaggtgcacggtgtttcctccgacacattggtgcggctggcttccgggttggatgcgcgctgtgttttaagaagcagtgcggcttggttgggttgtgtatcggaggacgcatgacttttgaccttcgtctctcccgagcccgtacgggagttgtagcaatgagacaagatagtaactactaaaacaattggttaccacgaaattgtggagaaacataaaaataaaaaaaaataaaaccatGTGTTGGACACCATTCCATTAACTGTGTTTCAGCCATTACTAAaaacccatcctccccaattaaggggaCACCAGCCACCTGTGCTCTGGATTAATTATCTGATATTAGTAAttaataaattggctacatttctttaaatgggCAATTCTGTGTagtgtcttgtgcaagttttaatttgatttgatgtgcaggagcttgcagggatttgtaatGTGCGTGTTGTCTGCTttgtgcaggagcttgcagggatttgtaatGTGCGTGTTGTCTGCTttgtgcaggagcttgcagggatttgtaatGTGCGTGTTGTCTGCTTTGTGCAGGAGCTTGAAGGGATTTGTAATGTGCGTGTTGTCTGCTGTGATGCTAATAAGCATTTGTTTAAATctgaaagtcaccttgtcctagagagatttacatggttaccATAACGTCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935722 lncRNA upstream 32375 38603092 ~ 38603485 (+) True G1692440
TU1935700 lncRNA upstream 56805 38578816 ~ 38579055 (+) True G1692423
TU1935698 lncRNA upstream 57420 38578192 ~ 38578440 (+) True G1692421
TU1935681 lncRNA upstream 67680 38567872 ~ 38568180 (+) True G1692404
TU1935654 lncRNA upstream 91187 38544444 ~ 38544673 (+) True G1692381
TU1935703 lncRNA downstream 72 38637192 ~ 38638149 (+) True LOC110499544
TU1935708 lncRNA downstream 6403 38643523 ~ 38645620 (+) False G1692428
TU1935709 lncRNA downstream 6403 38643523 ~ 38645620 (+) False G1692428
TU1935710 lncRNA downstream 6403 38643523 ~ 38645620 (+) True G1692428
TU1935739 lncRNA downstream 9777 38646897 ~ 38647109 (+) True G1692456
XR_005038003.1 mRNA upstream 41555 38580735 ~ 38594305 (+) True LOC110499600
XM_036956302.1 mRNA upstream 431890 38083895 ~ 38203970 (+) False LOC110499447
XM_036955563.1 mRNA downstream 2475 38639595 ~ 38640649 (+) True LOC118942016
XM_021576600.2 mRNA downstream 419916 39057036 ~ 39068138 (+) False LOC110499463
XM_021576601.2 mRNA downstream 419918 39057038 ~ 39068138 (+) True LOC110499463
XM_036956326.1 mRNA downstream 473770 39110890 ~ 39118850 (+) False plaub
XM_036956327.1 mRNA downstream 473770 39110890 ~ 39118850 (+) True plaub
TU1935683 other upstream 66414 38568269 ~ 38569446 (+) True G1692406
TU1935201 other upstream 407309 38228015 ~ 38228551 (+) True G1691992
TU1935199 other upstream 413125 38222505 ~ 38222735 (+) True G1691990
TU1934415 other upstream 826799 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 981796 37650626 ~ 37654064 (+) True G1691189
TU1935894 other downstream 73831 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 202814 38839934 ~ 38840271 (+) True G1692702
TU1936590 other downstream 719225 39356345 ~ 39359635 (+) False G1693184
TU1937209 other downstream 1244229 39881349 ~ 39881843 (+) True G1693699
TU1937210 other downstream 1244838 39881958 ~ 39882625 (+) True G1693700

Expression Profile