RNA id: XM_036956327.1


Basic Information

Item Value
RNA id XM_036956327.1
length 1784
RNA type mRNA
GC content 0.51
exon number 12
gene id plaub
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 39110890 ~ 39118850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGAAACATTTTGCCCTTCCGTGAGATCCGAGGAGTACTACTGAGAAACACTGCAAGTCCTGAACCACACGATTTCTCCAAACTCTTTGTGCAAGAAGTACAATAGATACTTtacccaacagagagagagagagatgggaaggagtATTTTGCTGCTGATTTTGACATCCACCCTGGCAGGGGTGTCACAGAGTGAGACGGGCTTGCTGAGACAGAAAAGACAGATTTCTAATTTCCCCTACCGAAAAAGATCAGGTGGCCTCTGTCGTCATGGTGGCACCTCTGTCCCTGCCCTGTCCGGAGAACACATGTTCTGCTTATGCACAGTTGGTTACGGTGGCAAACACTGTGAGTTAGATACAGCAGCCGCCTGCTACACGGGAACTGGGATGTACTACAGAGGCAAAGTGTCTCAGTCAGAGAGTGGGCGCAGGTGTGTGGGGTGGGACCTGGACACCAGAAAACGCCTGATGGGGTCTGACGTCTACTCCGGGAGGCACAACTACTGCAGGAATCTGGAGTACAAACGTCGTCCGTGGTGTTATGTAATGAAGGGTGTGGAGCAGGTACAGGAATACTGTGATATCCCTCGCTGTGGCGTACCTGTGGAGACAGGTCCCCTTGATGATCTGCCCACCGAGCCCACTGTACCAGACACAGCGTCCAGCCTGACAGAGTCCACGTGTGGCCAGCGTACCAGGAAGCAGATGAAGATCGTAGGAGGGACAGTTGCCGCTGTGGAATCCCACCCGTGGATGGCTGCCATATTCTGGAGGAGCCGTCAGTCTAAAGAGAACGTGTTCCGCTGTGGGGGAAGTCTGATCTCTCCCTGCTGGGTTCTGTCTGCTGCCCATTGCTTCCCTGACAGCTCTCAAACTAAAGCCTGCAGCCTCTTCGTCACTCTGGGGAAGAGTGCCATCAATGAGACTGATGACACCAAAGAACAGACCTTTCAGGTGGAAGAGGTCATCGTGCACGCAGAGTTCGAAAACAGCGAAGGCAACTTCAACAATGACATCGCTCTACTGAAGTTAAAGGCTGTAGATGGTCGGTGTGCAGTGGagagcagctctgtcaggactgTCTGCCTGCCCCCGGCACGCCAGGCCCTCGGCGCGGGATCCTCCTGTGAGATAGCAGGCTACGGAAGACAGAACGAGGGTTTATGGTACAATTCACAGTACCTGAGGGAGGCAACGGTAAACATTTTGGCCCATGACGTCTGCTCAGATAAGGCGTACTACGGAAACCTGATCACAGAAAACATGTTCTGTGCTGGGAGACCGGACTGGAGTCAAGATGCGTGCAAGGGTGATTCCGGAGGACCCATGGTGTGCGAGGTGGATAATCGAATGTTCCTTTTTGGAATCGTCAGTTGGGGCGAGGGGTGTTCTAGAGCCTTACGACCAGGCGTGTACACAGCAGTGACCAACTACAACAAGTGGATAGAAGAAAAAACAGGCTTATCCTCCGTCGCCTCAGGGTCTATGTACCCACTGAAATGACCTCCTCGGGGTCTATGTACCCACAGAAATGACCTCCTCGGGGTCTATGTACCCACAGAAATGACCTCCTCGGGGTCTATGTACCCACAGAAATGACCTCCTCAGGGTCTATGTACCCACATAAATAACCTCCTTAGGGTCTGTTATAGACACTATATCATGTTGTATAATTGTACATATAGGAATATAAGTATTTTAACTACTgaaatgtaaacatatttttGTACTTCTGTCTTTTTCAAAAAGGGGCAACAATAAATAATTTTTATATTACTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K01348 PLAU; urokinase plasminogen activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1936185 lncRNA upstream 41770 39027006 ~ 39069120 (+) True G1692829
TU1936231 lncRNA upstream 50784 39059494 ~ 39060106 (+) True G1692870
TU1936221 lncRNA upstream 70849 39038618 ~ 39040041 (+) True G1692860
TU1936210 lncRNA upstream 84384 39019155 ~ 39026506 (+) True G1692851
TU1936207 lncRNA upstream 94162 39016074 ~ 39016728 (+) True G1692850
TU1936272 lncRNA downstream 20152 39139002 ~ 39139289 (+) True G1692906
TU1936280 lncRNA downstream 39897 39158747 ~ 39159276 (+) False G1692913
TU1936281 lncRNA downstream 39897 39158747 ~ 39159276 (+) True G1692913
TU1936286 lncRNA downstream 53680 39172530 ~ 39175253 (+) True G1692916
TU1936452 lncRNA downstream 102694 39221544 ~ 39221809 (+) True G1693053
XM_021576600.2 mRNA upstream 42752 39057036 ~ 39068138 (+) False LOC110499463
XM_021576601.2 mRNA upstream 42752 39057038 ~ 39068138 (+) True LOC110499463
XM_036955563.1 mRNA upstream 470241 38639595 ~ 38640649 (+) True LOC118942016
XM_036956317.1 mRNA upstream 472118 38594819 ~ 38638772 (+) False LOC110499544
XM_036956328.1 mRNA downstream 5228 39124078 ~ 39196200 (+) False LOC110499465
XM_036956329.1 mRNA downstream 5229 39124079 ~ 39196200 (+) True LOC110499465
XR_005038007.1 mRNA downstream 25106 39143956 ~ 39150401 (+) False LOC118942069
XR_005038008.1 mRNA downstream 25106 39143956 ~ 39150401 (+) False LOC118942069
XR_005038009.1 mRNA downstream 25106 39143956 ~ 39150401 (+) False LOC118942069
TU1936048 other upstream 270619 38839934 ~ 38840271 (+) True G1692702
TU1935894 other upstream 398599 38710951 ~ 38712291 (+) True G1692568
TU1935683 other upstream 541444 38568269 ~ 38569446 (+) True G1692406
TU1935201 other upstream 882339 38228015 ~ 38228551 (+) True G1691992
TU1935199 other upstream 888155 38222505 ~ 38222735 (+) True G1691990
TU1936590 other downstream 237495 39356345 ~ 39359635 (+) False G1693184
TU1937209 other downstream 762499 39881349 ~ 39881843 (+) True G1693699
TU1937210 other downstream 763108 39881958 ~ 39882625 (+) True G1693700
TU1937449 other downstream 1092672 40211522 ~ 40212953 (+) True G1693914
TU1938999 other downstream 2499177 41618027 ~ 41618505 (+) True G1695272

Expression Profile