RNA id: TU1913853


Basic Information

Item Value
RNA id TU1913853
length 210
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1672768
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20951478 ~ 20951687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcagcctcaggatatgtggtttccagtttccatagagtcaaataaagttcgttcagggccatcgatgtgtctgcttgggggggaatatatacggctgtgattataatcgaagagaattcccttggtagataatgcggtcgacatttggttgtgaggaattctaaatcaggtgaacagaaggacttgagttcctgtatgttgttgtgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1913851 lncRNA upstream 23269 20927949 ~ 20928209 (+) True G1672766
TU1913850 lncRNA upstream 34638 20915765 ~ 20916840 (+) True G1672765
TU1913848 lncRNA upstream 49189 20901930 ~ 20902289 (+) True G1672763
TU1913847 lncRNA upstream 49684 20901332 ~ 20901794 (+) True G1672762
TU1913846 lncRNA upstream 50238 20900773 ~ 20901240 (+) True G1672761
TU1913854 lncRNA downstream 17004 20968691 ~ 20969374 (+) True G1672769
TU1913855 lncRNA downstream 19082 20970769 ~ 20970970 (+) True G1672770
TU1913870 lncRNA downstream 88482 21040169 ~ 21041867 (+) True G1672785
TU1913946 lncRNA downstream 92092 21043779 ~ 21043989 (+) True G1672856
TU1913967 lncRNA downstream 104114 21055801 ~ 21056489 (+) True G1672877
XM_021576024.2 mRNA upstream 187396 20735432 ~ 20764082 (+) False LOC110499111
XM_036955958.1 mRNA upstream 187396 20748856 ~ 20764082 (+) True LOC110499111
XM_036955957.1 mRNA upstream 216139 20706399 ~ 20735339 (+) True LOC110499112
XM_021576029.2 mRNA upstream 263415 20654464 ~ 20688063 (+) False LOC110499114
XR_005037956.1 mRNA upstream 307410 20493325 ~ 20644068 (+) True LOC118942050
XM_021576019.2 mRNA downstream 50964 21002651 ~ 21040111 (+) False LOC110499108
XM_021576020.2 mRNA downstream 50964 21002651 ~ 21040111 (+) True LOC110499108
XM_021576017.2 mRNA downstream 202848 21154535 ~ 21168654 (+) False LOC110499107
XM_021576015.2 mRNA downstream 202850 21154537 ~ 21168654 (+) True LOC110499107
trnal-uag-53 mRNA downstream 276836 21228523 ~ 21228604 (+) True trnal-uag-53
TU1911957 other upstream 723310 20227795 ~ 20228168 (+) True G1671091
TU1911253 other upstream 1826242 19095044 ~ 19125236 (+) False LOC110499153
TU1910974 other upstream 2830311 18051611 ~ 18121167 (+) False G1670209
TU1914009 other downstream 137716 21089403 ~ 21089830 (+) True G1672918
TU1914069 other downstream 188838 21140525 ~ 21191078 (+) True G1672973
TU1914145 other downstream 344685 21296372 ~ 21296854 (+) True G1673044
TU1914164 other downstream 365111 21316798 ~ 21317412 (+) True G1673063
TU1914333 other downstream 434642 21386329 ~ 21389778 (+) True G1673204

Expression Profile