RNA id: TU1922301


Basic Information

Item Value
RNA id TU1922301
length 1298
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1680423
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27688971 ~ 27693140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGACAGCGGATTTGCTCAATGTGTAGCTCAAGCGCACCTAGCAAATGCAATGGGTGTAGACGGAGAAGAAAATAGAGACCCAACTCGGCGGAAAATATTTTCCCTCCAGCAGATGTGACCCTGTGCTAACAAGGCTCCTGAGCCAATATCCTCCATTCCAGCTGGTCAGGACAGCCTTAAACAGCCCACGGAGCAGCTCAGCCTGGACAGAGCTACAAACAGATAATAAAGACAGTCCGTGATTGGGCATTCTCTCTTCATCGTCCAAAAGCTGTTTAGTTTGGTCCGAAGATTTCCTCAGTCTCTGGCTGGGGAACAGGATCCATTTCATAAAGGGATCAGAGCCACCATCTTGGCCTGACTTCATTGAGATGTGCTTCTCTGTCTAAATGGACTGTGTGGTCTGTTTTCTCTCCCACACAGAGATGTCTTAATCACGCTTGCTGTGCTGTGTGAGGGCCTTGTTGGAGATGTTGGCCCTCAGGCACCCTGGTCAGGCTTAGTTGTACTGCTTGATATGGATGGCGTTTTCCGGCCTCctcaggccagagttcaaactAGCCCACAAACTAGCCCACCTCCTGCTGAACAACTCGGAGGTGTAACATCTCACGCTGATCAAGTGCAACTCTGTAGGAAGCAAGCCAGCCTTTTTGGACTCTTTCACAGTACAACATCTGCAGAGGCTGACTGTGTCTTACCCCGTGTGTGGGTCTGGCCAGACATATGACATCATACTGGGGAGGGAAATGGGTGCACCTTACTATGAAGAGACCAGGCTAGGAATCATCCACAGCTCAGTGCTGATGGGAGAATCCAATGTTGAAGGCCTATAAATTTCAAACCAATATAGACAGCAACGGAATCCTCCCTTTTTCATATCTCCTGTCTGAAGTCAAGCTACCAGAGACTTCCTGTATATTTGTAAttttttatatactgtactaaTGCAGATTCTTTTTTTCTATGCTATCATTGCCAATGTACCACTACCTATGTCTGTGACTACAATCTTCATAATCACTTTTGACCAAACAGAATGTTTATCCTTGTGGTGATTTCAATATAATAAGGTCAGGATTCAATCATTGCAGATGGTATATTTTCGCACTTCACTTTTAGGGGTGGGTTAGATTTACATAATAGCATGTCTCAAATTGTGCCATTACTTTTTTAGATATATGTTTTAGATATTTTCACTTCATTTAGACAGTAAGGAAATCAGAGGGGGAGACCGGCAGGTGGGAGGAACAGTGGACACGGGGATTGAACCCTGGTCCCCAGCGGGGAGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922299 lncRNA upstream 13691 27674929 ~ 27675280 (+) True G1680421
TU1922298 lncRNA upstream 14487 27674040 ~ 27674484 (+) True G1680420
TU1922293 lncRNA upstream 17714 27671021 ~ 27671257 (+) True G1680415
TU1922290 lncRNA upstream 21891 27666772 ~ 27667080 (+) True G1680412
TU1922289 lncRNA upstream 22347 27666381 ~ 27666624 (+) True G1680411
TU1922508 lncRNA downstream 15092 27708232 ~ 27708458 (+) True G1680611
TU1922544 lncRNA downstream 40209 27733349 ~ 27734096 (+) True G1680647
TU1922592 lncRNA downstream 74478 27767618 ~ 27768095 (+) True G1680694
TU1922604 lncRNA downstream 94395 27787535 ~ 27788023 (+) True G1680705
TU1922610 lncRNA downstream 101063 27794203 ~ 27794710 (+) True G1680711
XM_021576325.2 mRNA upstream 5064 27676593 ~ 27683907 (+) True LOC110499283
XM_036956108.1 mRNA upstream 62186 27610623 ~ 27626785 (+) False map3k21
XM_036956110.1 mRNA downstream 77602 27770742 ~ 27786519 (+) False LOC100136337
XM_036956109.1 mRNA downstream 78141 27771281 ~ 27786519 (+) True LOC100136337
XM_021576338.2 mRNA downstream 121249 27814389 ~ 27858095 (+) False arfgef3
XM_021576329.2 mRNA downstream 122077 27815217 ~ 27858095 (+) False arfgef3
XM_021576330.2 mRNA downstream 122077 27815217 ~ 27858095 (+) False arfgef3
TU1922082 other upstream 313152 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 601508 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 913291 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1032860 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1055773 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 1024221 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1084866 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1764088 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1879295 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1881618 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile