RNA id: TU1931345


Basic Information

Item Value
RNA id TU1931345
length 2122
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1688533
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34879206 ~ 34881587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTCATCAACAACCTACTGGGTATTCATCAACAACCTACTGGGTATTCATCAACAACCTACTGGGTATTCATCATGATGTCAGTTCTCTTTCTTTATTCATGGAGTTGTATGGCTGTTTATTCAATGCTATCTATTTCAAAAGCTGACCCCTGCTTGGTTGTTATGGAGGCAAAGTGTGGGAATTTATTGACCATCGACCACAGGTTGGCTACTGCAGTGATAATGTTAATGAATCAATACAGAGTGCTATCAGTGGCACAATTAAGGCTGTATTTCATGTTCCACACCAAGTTGTACCTCTGCAAGGGCAGCTCTACTGTCTGTCACTTCAAACTAGTGCATTAGTCTGTATTATCCTGACAAAATGAATCCCTGGTTGTGGATCTCATTAATGTTGCACTGGTGGGATAAACAGTGGTGAAAAACAAATAAGCGATTTATAGTGCCTTTGGTAATGAACCACAATGCACTTGCTTTTGACCTGCAAGTTATATTTGAGCTTATGATTATCAGTCATGCTAACAAATAAAAGATGATGAAAATATGCCAACACAGATGGTCCTGAACCCAAATGCCAACCTACAGTATTATAGTACAAACACAAAGTGCATTGGACCAGAATACAGATGTCTGAGGGTGTCCAGCATCAAACAAAtacagcagcatctggttgcaGCCTGAGCATGTTTTAGGCACATTTGATGTGCTCAAAGAGTGTCAACAAATTGGAGAGATGGCATGTCCCATCTGCAGACTGTCTATTTATTTGTGTGAAATGTGCTATGGTAGAGAGACAAAATGGTTACACCGTCTCAAGCTTATTGAACTACAACTACTGTAGCCCTTTCTGTTTTATTTGTCAACAAACATATGGTATAAATATGGTATAACATGTCCATCTTTTTCATAACAAAACGTTTTCATAAAATGCTGAATTTCCAGTGACCTCTTTAGCCTTCCATGTCCTTCACGGATTACTAATGTTCTGAGTAATGGTGTTTTGGCATAAAGTGATACATGTTTAACTAACAGAACAGAAAGTAATGTCTTCTACCAGACAACAGTATAATTAGTCTCATTCACCCAATATAATGGCTGTGGTTGGTAGAGTTCATgctaaatgttttttgttgtgtGCTTCAGTTTCTATTGCTGCTTATGGTTTCAGAGGTCTTCTGATTTTGTAATTTGATGGTaacatatttatcaaaatattgTCTCAGTAGCGTTGACAAAGCTTTGATGAGTCAGCATTTTTTTCAATCTTCATTTGTTTCAAAAAATTGTGTTCTTCTTACATATGAACAGACCTCCATGCTTTTAGTTCCATTGTTATTTATCAAGGTAGAGCTCTAGCCTATACAATTGTGGACTGTTTATATTTCTGACTTAACAGTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAATAACAACATGCTTCTTAGAATAACAACATGCTTCTTAGAATAAAAACATGCTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAATAACAACATGGGTCTTAGAAAACATCAACAGACATGAAATTGTGAGCAATGTTTTCCAGTGGCAGATAATCATACATTGCGCTAACCTTACAGCTACTCTCGTCTTTTATCTATGAGTGGTTTTGGATTGACACAAATGTCTGCCTGGGAGTATTAGCAACAAGCATATTTAATTGAAATCATTGCTTGACATCTACATGCAGAAACACTCTATTTACTTTAAGCTAATGATTCTTGGCAAAGAATGGCAGGATTTAACCTTGTTACTCTTTCATTGCAAAGCTTGTGAGGTTGAAAGGACAATGGCATAATCTCCTTTCATCAAAGATTCTACACCTCTTTGATGAGGTATAATGACTTGGTATAATCATACTGTGTGCAAGCGTTGTTGTGTGTGCTGTATTTCTCACCTTGGAGAACAGTTCTGAATAGTGATTGCAAGTTCTCTTTCTGCTCCAGGTAAGATTATGATTAAGGCCATTGGGTTTGGGTACCTTTTCAGTTTGGGTCCGTTAGTTAACAATACAAAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1931222 lncRNA upstream 126304 34752442 ~ 34752902 (+) True G1688418
TU1931218 lncRNA upstream 128770 34750004 ~ 34750436 (+) True G1688414
TU1931214 lncRNA upstream 131883 34746857 ~ 34747323 (+) True G1688410
TU1931209 lncRNA upstream 136170 34742831 ~ 34743036 (+) True G1688405
TU1930610 lncRNA upstream 193730 34684693 ~ 34685476 (+) True LOC110499597
TU1931491 lncRNA downstream 198316 35079903 ~ 35080125 (+) True G1688674
TU1931547 lncRNA downstream 292171 35173758 ~ 35173985 (+) True G1688728
TU1931548 lncRNA downstream 294120 35175707 ~ 35176286 (+) True G1688729
TU1931854 lncRNA downstream 304432 35186019 ~ 35191028 (+) True G1689018
TU1931932 lncRNA downstream 351614 35233201 ~ 35233536 (+) True G1689092
XR_002469988.2 mRNA upstream 193728 34684614 ~ 34685478 (+) False LOC110499597
XM_021576506.2 mRNA upstream 207776 34656043 ~ 34671430 (+) True LOC110499390
XM_021576502.2 mRNA upstream 248944 34627219 ~ 34630262 (+) False LOC110499387
XM_021576503.2 mRNA upstream 248944 34627225 ~ 34630262 (+) True LOC110499387
XM_036956245.1 mRNA upstream 252628 34617156 ~ 34626578 (+) True LOC110499384
XM_021576511.2 mRNA downstream 431024 35312611 ~ 35323282 (+) False LOC110499393
XM_021576512.2 mRNA downstream 431062 35312649 ~ 35323282 (+) False LOC110499393
XM_021576510.2 mRNA downstream 431098 35312685 ~ 35323282 (+) False LOC110499393
XM_021576513.2 mRNA downstream 431888 35313475 ~ 35323282 (+) True LOC110499393
XM_021576514.2 mRNA downstream 456862 35338449 ~ 35374027 (+) True LOC110499394
TU1930380 other upstream 552952 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1693930 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2217558 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 5302648 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 500122 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 500122 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 799780 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 819633 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 999991 35881578 ~ 35881874 (+) True G1689671

Expression Profile