RNA id: TU1933090


Basic Information

Item Value
RNA id TU1933090
length 302
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G1690094
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36266564 ~ 36266865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCTTGTAGAGGTGTGCGTGTGTTAAAATCTCACTTGCTCTCAAATGTGTCAATCAATTAAGCGTAATCAATAAATGTATGATAATCCGGCGTCTGACCTCTGGGGTCATCCTACTGACAGTAAGTACATCGTATCCTGCTGTGAGGAAGTTGGCAGTGTAGCTCTCCAGCTGGAACTCACACAACCATTGGTAGATGGCCTCAGAGTCCTATAGACGGAGAACAGAGGGTTATCACACAGACATGaacggacagacagactgacacacacccTATTCAACTTACGCTGCCCACCAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933089 lncRNA upstream 446 36265884 ~ 36266118 (+) True G1690093
TU1933088 lncRNA upstream 1583 36264660 ~ 36264981 (+) True G1690092
TU1933086 lncRNA upstream 3433 36261774 ~ 36263131 (+) True G1690091
TU1933084 lncRNA upstream 11228 36254816 ~ 36255336 (+) True G1690089
TU1933083 lncRNA upstream 16149 36250096 ~ 36250415 (+) True G1690088
TU1933091 lncRNA downstream 640 36267505 ~ 36267705 (+) True G1690095
TU1933094 lncRNA downstream 8023 36274888 ~ 36275127 (+) True G1690098
TU1933102 lncRNA downstream 18268 36285133 ~ 36285372 (+) True G1690106
TU1933137 lncRNA downstream 67252 36334117 ~ 36334936 (+) True G1690134
TU1933143 lncRNA downstream 77426 36344291 ~ 36346030 (+) True G1690139
XM_021576572.2 mRNA upstream 19052 36207378 ~ 36247512 (+) True LOC110499432
XM_021576571.2 mRNA upstream 86963 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 95665 36161203 ~ 36170899 (+) True LOC110499428
XM_021576566.2 mRNA upstream 108782 36125765 ~ 36157782 (+) False LOC110499426
XR_005038403.1 mRNA downstream 156881 36423746 ~ 36423861 (+) True LOC118942466
XM_036956294.1 mRNA downstream 170340 36437205 ~ 36540905 (+) True LOC110499434
XM_036956295.1 mRNA downstream 287014 36553879 ~ 36564830 (+) False LOC110499435
XM_036955562.1 mRNA downstream 311861 36578726 ~ 36584090 (+) False LOC118942015
XM_036956296.1 mRNA downstream 428910 36695775 ~ 36809459 (+) False LOC110499541
TU1933087 other upstream 1583 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 141174 36120616 ~ 36125390 (+) True G1689732
TU1932587 other upstream 384690 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 564425 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 584127 35681367 ~ 35682437 (+) True G1689347
TU1933095 other downstream 8617 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 38074 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 38074 36304939 ~ 36312698 (+) True G1690116
TU1933843 other downstream 611186 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 1275055 37541920 ~ 37543265 (+) True G1691142

Expression Profile